{"id":"https://openalex.org/W4385272273","doi":"https://doi.org/10.3389/fbinf.2023.1243663","title":"Digital staining facilitates biomedical microscopy","display_name":"Digital staining facilitates biomedical microscopy","publication_year":2023,"publication_date":"2023-07-26","ids":{"openalex":"https://openalex.org/W4385272273","doi":"https://doi.org/10.3389/fbinf.2023.1243663","pmid":"https://pubmed.ncbi.nlm.nih.gov/37564725"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1243663","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1243663","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1243663/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1243663/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103021109","display_name":"Michael John Fanous","orcid":"https://orcid.org/0009-0009-4069-9745"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael John Fanous","raw_affiliation_strings":["Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071043246","display_name":"Nir Pillar","orcid":"https://orcid.org/0000-0003-4979-1440"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nir Pillar","raw_affiliation_strings":["Bioengineering Department, University of California, Los Angeles, CA, United States","Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016207990","display_name":"Aydogan \u00d6zcan","orcid":"https://orcid.org/0000-0002-0717-683X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aydogan Ozcan","raw_affiliation_strings":["Bioengineering Department, University of California, Los Angeles, CA, United States","California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, United States","Department of Surgery, David Geffen School of Medicine, University of California, Los Angeles, CA, United States","Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Surgery, David Geffen School of Medicine, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016207990"],"corresponding_institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":1.0814,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.80210689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"3","issue":null,"first_page":"1243663","last_page":"1243663"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.8637641668319702},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.7244950532913208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5304018259048462},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3994494378566742},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.386918842792511},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.307788610458374},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14038768410682678}],"concepts":[{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.8637641668319702},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.7244950532913208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5304018259048462},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3994494378566742},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.386918842792511},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.307788610458374},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14038768410682678}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3389/fbinf.2023.1243663","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1243663","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1243663/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37564725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37564725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt0mq0z8b8","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/0mq0z8b8","pdf_url":"https://escholarship.org/content/qt0mq0z8b8/qt0mq0z8b8.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10411189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10411189","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10411189/pdf/fbinf-03-1243663.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:ark:/13030/qt0mq0z8b8","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:8fcd1442993c4c7f8392f3a211542552","is_oa":true,"landing_page_url":"https://doaj.org/article/8fcd1442993c4c7f8392f3a211542552","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1243663","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1243663","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1243663/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4385272273.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1486131515","https://openalex.org/W1504644673","https://openalex.org/W2047090204","https://openalex.org/W2517760358","https://openalex.org/W2794744817","https://openalex.org/W2884160046","https://openalex.org/W2892479404","https://openalex.org/W2904591139","https://openalex.org/W2949493305","https://openalex.org/W2979482445","https://openalex.org/W3002164240","https://openalex.org/W3011056387","https://openalex.org/W3012582094","https://openalex.org/W3015979632","https://openalex.org/W3033819176","https://openalex.org/W3080929542","https://openalex.org/W3096831136","https://openalex.org/W3098491829","https://openalex.org/W3104250195","https://openalex.org/W3112158685","https://openalex.org/W3126071990","https://openalex.org/W3156559270","https://openalex.org/W3174491737","https://openalex.org/W3191728126","https://openalex.org/W3198053940","https://openalex.org/W3203215276","https://openalex.org/W3203786283","https://openalex.org/W3214082102","https://openalex.org/W4200080731","https://openalex.org/W4220666329","https://openalex.org/W4221038306","https://openalex.org/W4225985635","https://openalex.org/W4246743565","https://openalex.org/W4249336316","https://openalex.org/W4284969777","https://openalex.org/W4284972351","https://openalex.org/W4294992465","https://openalex.org/W4306156561","https://openalex.org/W4309647527","https://openalex.org/W4310225029","https://openalex.org/W4323037718","https://openalex.org/W4377010966"],"related_works":["https://openalex.org/W2383463315","https://openalex.org/W2361625425","https://openalex.org/W2373675175","https://openalex.org/W2351810720","https://openalex.org/W2347460050","https://openalex.org/W2912451268","https://openalex.org/W2364311093","https://openalex.org/W2125266680","https://openalex.org/W2330132752","https://openalex.org/W4206758420"],"abstract_inverted_index":{"Traditional":[0],"staining":[1,30,46,55],"of":[2,92],"biological":[3],"specimens":[4],"for":[5,43],"microscopic":[6],"imaging":[7,103],"entails":[8],"time-consuming,":[9],"laborious,":[10],"and":[11,20,40,77,102],"costly":[12],"procedures,":[13],"in":[14,104],"addition":[15],"to":[16,65,89],"producing":[17],"inconsistent":[18],"labeling":[19],"causing":[21],"irreversible":[22],"sample":[23,100],"damage.":[24],"In":[25],"recent":[26],"years,":[27],"computational":[28],"\"virtual\"":[29],"using":[31],"deep":[32],"learning":[33],"techniques":[34,56],"has":[35],"evolved":[36],"into":[37],"a":[38,90],"robust":[39],"comprehensive":[41],"application":[42],"streamlining":[44],"the":[45],"process":[47],"without":[48],"typical":[49],"histochemical":[50],"staining-related":[51],"drawbacks.":[52],"Such":[53],"virtual":[54],"can":[57,96],"also":[58],"be":[59],"combined":[60],"with":[61],"neural":[62],"networks":[63],"designed":[64],"correct":[66],"various":[67],"microscopy":[68],"aberrations,":[69],"such":[70,86],"as":[71],"out-of-focus":[72],"or":[73],"motion":[74],"blur":[75],"artifacts,":[76],"improve":[78,98],"upon":[79],"diffracted-limited":[80],"resolution.":[81],"Here,":[82],"we":[83],"highlight":[84],"how":[85],"methods":[87],"lead":[88],"host":[91],"new":[93],"opportunities":[94],"that":[95],"significantly":[97],"both":[99],"preparation":[101],"biomedical":[105],"microscopy.":[106]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
