{"id":"https://openalex.org/W4381429387","doi":"https://doi.org/10.3389/fbinf.2023.1199675","title":"Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode","display_name":"Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode","publication_year":2023,"publication_date":"2023-06-20","ids":{"openalex":"https://openalex.org/W4381429387","doi":"https://doi.org/10.3389/fbinf.2023.1199675","pmid":"https://pubmed.ncbi.nlm.nih.gov/37409347"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1199675","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1199675","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1199675/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1199675/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032820227","display_name":"Nour Nissan","orcid":null},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4390039273","display_name":"Ottawa Research and Development Centre","ror":"https://ror.org/03fx3ra47","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039273"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nour Nissan","raw_affiliation_strings":["Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039273"]},{"raw_affiliation_string":"Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036541348","display_name":"Julia Hooker","orcid":null},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4390039273","display_name":"Ottawa Research and Development Centre","ror":"https://ror.org/03fx3ra47","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039273"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Julia Hooker","raw_affiliation_strings":["Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039273"]},{"raw_affiliation_string":"Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003683003","display_name":"Eric Arezza","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eric Arezza","raw_affiliation_strings":["Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016923656","display_name":"Kevin Dick","orcid":"https://orcid.org/0000-0003-3931-523X"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kevin Dick","raw_affiliation_strings":["Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005719112","display_name":"Ashkan Golshani","orcid":"https://orcid.org/0009-0008-9171-6245"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ashkan Golshani","raw_affiliation_strings":["Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091794872","display_name":"Benjamin Mimee","orcid":"https://orcid.org/0000-0002-9601-6140"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4390039346","display_name":"Saint-Jean-sur-Richelieu Research and Development Centre","ror":"https://ror.org/03yke0t02","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039346"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin Mimee","raw_affiliation_strings":["Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu Research and Development Centre, Saint-Jeansur-Richelieu, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu Research and Development Centre, Saint-Jeansur-Richelieu, QC, Canada","institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061698724","display_name":"Elroy R. Cober","orcid":"https://orcid.org/0000-0002-4673-1808"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4390039273","display_name":"Ottawa Research and Development Centre","ror":"https://ror.org/03fx3ra47","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039273"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Elroy Cober","raw_affiliation_strings":["Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078223816","display_name":"James R. Green","orcid":"https://orcid.org/0000-0002-6039-2355"},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"James Green","raw_affiliation_strings":["Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Engineering, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014369626","display_name":"Bahram Samanfar","orcid":"https://orcid.org/0000-0001-6625-2153"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4390039273","display_name":"Ottawa Research and Development Centre","ror":"https://ror.org/03fx3ra47","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039273"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Bahram Samanfar","raw_affiliation_strings":["Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039273"]},{"raw_affiliation_string":"Department of Biology and Ottawa Institute of Systems Biology, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5014369626"],"corresponding_institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I4390039273","https://openalex.org/I67031392"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.7488,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.81185536,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"3","issue":null,"first_page":"1199675","last_page":"1199675"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11179","display_name":"Nematode management and characterization studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11179","display_name":"Nematode management and characterization studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/soybean-cyst-nematode","display_name":"Soybean cyst nematode","score":0.943523108959198},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5877681970596313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5655272006988525},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5456424951553345},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5295527577400208},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5029978156089783},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4944615364074707},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4681397080421448},{"id":"https://openalex.org/keywords/ribosomal-protein","display_name":"Ribosomal protein","score":0.4234035611152649},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4132431149482727},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3535374104976654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27465885877609253}],"concepts":[{"id":"https://openalex.org/C2779553229","wikidata":"https://www.wikidata.org/wiki/Q960305","display_name":"Soybean cyst nematode","level":3,"score":0.943523108959198},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5877681970596313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5655272006988525},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5456424951553345},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5295527577400208},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5029978156089783},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4944615364074707},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4681397080421448},{"id":"https://openalex.org/C38062823","wikidata":"https://www.wikidata.org/wiki/Q3408228","display_name":"Ribosomal protein","level":5,"score":0.4234035611152649},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4132431149482727},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3535374104976654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27465885877609253},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2023.1199675","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1199675","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1199675/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37409347","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37409347","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10319130","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10319130","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10319130/pdf/fbinf-03-1199675.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3401be6ce91f4c9ebf41d70072644779","is_oa":true,"landing_page_url":"https://doaj.org/article/3401be6ce91f4c9ebf41d70072644779","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1199675","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1199675","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1199675/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314217","display_name":"Grain Farmers of Ontario","ror":"https://ror.org/023tfyg79"},{"id":"https://openalex.org/F4320334595","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4381429387.pdf"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W313005923","https://openalex.org/W1544009106","https://openalex.org/W1969353942","https://openalex.org/W1990315216","https://openalex.org/W1993988038","https://openalex.org/W2012986985","https://openalex.org/W2022771323","https://openalex.org/W2042811179","https://openalex.org/W2050694525","https://openalex.org/W2057311550","https://openalex.org/W2061170799","https://openalex.org/W2065304353","https://openalex.org/W2097591011","https://openalex.org/W2099982459","https://openalex.org/W2151412657","https://openalex.org/W2152687832","https://openalex.org/W2153280946","https://openalex.org/W2161701113","https://openalex.org/W2165106082","https://openalex.org/W2318290109","https://openalex.org/W2318899560","https://openalex.org/W2346533695","https://openalex.org/W2395626726","https://openalex.org/W2419672076","https://openalex.org/W2506377511","https://openalex.org/W2550424410","https://openalex.org/W2553330985","https://openalex.org/W2599938617","https://openalex.org/W2611209364","https://openalex.org/W2618529956","https://openalex.org/W2774998171","https://openalex.org/W2791165190","https://openalex.org/W2804331675","https://openalex.org/W2884287263","https://openalex.org/W2887551661","https://openalex.org/W2913484841","https://openalex.org/W2937039765","https://openalex.org/W2939114666","https://openalex.org/W2951422523","https://openalex.org/W3002282537","https://openalex.org/W3004238495","https://openalex.org/W3012769614","https://openalex.org/W3049768643","https://openalex.org/W3146305827","https://openalex.org/W3155644202","https://openalex.org/W3177828909","https://openalex.org/W3204130096","https://openalex.org/W3211795435","https://openalex.org/W4205754523","https://openalex.org/W4210559894","https://openalex.org/W4213018712","https://openalex.org/W4233751197","https://openalex.org/W4237110111","https://openalex.org/W4321378013","https://openalex.org/W6610833921"],"related_works":["https://openalex.org/W2165589695","https://openalex.org/W2379291875","https://openalex.org/W2067939686","https://openalex.org/W2169559923","https://openalex.org/W4280510975","https://openalex.org/W2054857602","https://openalex.org/W16591529","https://openalex.org/W3047325359","https://openalex.org/W1980965231","https://openalex.org/W2391947332"],"abstract_inverted_index":{"The":[0,79],"soybean":[1,14,129,164],"cyst":[2],"nematode":[3,210],"(SCN)":[4],"[":[5,15],"Heterodera":[6],"glycines":[7],"Ichinohe]":[8],"is":[9,21,48,226],"a":[10,24,63,153],"devastating":[11],"pathogen":[12],"of":[13,113,133,147,229,236],"Glycine":[16],"max":[17],"(L.)":[18],"Merr.]":[19],"that":[20,50,166,247],"rapidly":[22],"becoming":[23],"global":[25],"economic":[26],"issue.":[27],"Two":[28],"loci":[29],"conferring":[30],"SCN":[31,56,72,171,260],"resistance":[32,73,238,261],"have":[33],"been":[34],"identified":[35,175],"in":[36,124,157,170,263],"soybean,":[37],"Rhg1":[38,115,148,186,240],"and":[39,95,116,121,149,187,221,241],"Rhg4;":[40],"however,":[41],"they":[42],"offer":[43],"declining":[44],"protection.":[45],"Therefore,":[46],"it":[47],"imperative":[49],"we":[51,61,105,151,194],"identify":[52,67,162,258],"additional":[53],"mechanisms":[54],"for":[55],"resistance.":[57,172],"In":[58],"this":[59],"paper,":[60],"develop":[62],"bioinformatics":[64],"pipeline":[65,80,174,246],"to":[66,71,100,139,161,206,208,232,250,257],"protein\u2013protein":[68,85],"interactions":[69],"related":[70,138,205],"by":[74,155],"data":[75],"mining":[76],"massive-scale":[77],"datasets.":[78],"combines":[81],"two":[82],"leading":[83],"sequence-based":[84],"interaction":[86],"predictors,":[87],"the":[88,107,114,143,185,209,227],"Protein\u2013protein":[89],"Interaction":[90],"Prediction":[91],"Engine":[92],"(PIPE),":[93],"PIPE4,":[94],"Scoring":[96],"PRotein":[97],"INTeractions":[98],"(SPRINT)":[99],"predict":[101,233],"high-confidence":[102,255],"interactomes.":[103,189],"First,":[104],"predicted":[106,145],"top":[108,144],"soy":[109],"interacting":[110,130,234],"protein":[111],"partners":[112,235],"Rhg4":[117,188],"proteins.":[118],"Both":[119],"PIPE4":[120],"SPRINT":[122],"overlap":[123,182],"their":[125,252],"predictions":[126],"with":[127,142,184,202],"58":[128],"partners,":[131],"19":[132],"which":[134],"had":[135],"GO":[136,191,203],"terms":[137,204],"defense.":[140],"Beginning":[141],"interactors":[146],"Rhg4,":[150,242],"implement":[152],"\u201cguilt":[154],"association\u201d":[156],"silico":[158],"proteome-wide":[159],"approach":[160],"novel":[163,259],"genes":[165,178,198,201,262],"may":[167],"be":[168],"involved":[169],"This":[173,224],"1,082":[176],"candidate":[177],"whose":[179],"local":[180],"interactomes":[181],"significantly":[183],"Using":[190],"enrichment":[192],"tools,":[193],"highlighted":[195],"many":[196],"important":[197],"including":[199],"five":[200],"response":[207],"(GO:0009624),":[211],"namely,":[212],"Glyma.18G029000":[213],",":[214,216,218,220],"Glyma.11G228300":[215],"Glyma.08G120500":[217],"Glyma.17G152300":[219],"Glyma.08G265700":[222],".":[223],"study":[225],"first":[228],"its":[230],"kind":[231],"known":[237],"proteins":[239],"forming":[243],"an":[244],"analysis":[245],"enables":[248],"researchers":[249],"focus":[251],"search":[253],"on":[254],"targets":[256],"soybean.":[264]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
