{"id":"https://openalex.org/W4367321738","doi":"https://doi.org/10.3389/fbinf.2023.1162723","title":"The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality","display_name":"The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality","publication_year":2023,"publication_date":"2023-04-27","ids":{"openalex":"https://openalex.org/W4367321738","doi":"https://doi.org/10.3389/fbinf.2023.1162723","pmid":"https://pubmed.ncbi.nlm.nih.gov/37181487"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1162723","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1162723","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1162723/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1162723/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019197163","display_name":"Andreas Bueckle","orcid":"https://orcid.org/0000-0002-8977-498X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andreas Bueckle","raw_affiliation_strings":["Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028113453","display_name":"Catherine Qing","orcid":"https://orcid.org/0000-0002-5816-0635"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Catherine Qing","raw_affiliation_strings":["Department of Humanities and Sciences, Stanford University, Stanford, CA, United States","Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Humanities and Sciences, Stanford University, Stanford, CA, United States","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072098269","display_name":"Shefali Luley","orcid":"https://orcid.org/0000-0002-6869-434X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shefali Luley","raw_affiliation_strings":["Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010295629","display_name":"Yash Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yash Kumar","raw_affiliation_strings":["Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014229162","display_name":"Naval Pandey","orcid":"https://orcid.org/0000-0003-0909-8772"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naval Pandey","raw_affiliation_strings":["Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068784452","display_name":"Katy B\u00f6rner","orcid":"https://orcid.org/0000-0002-3321-6137"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katy B\u00f6rner","raw_affiliation_strings":["Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019197163","https://openalex.org/A5028113453"],"corresponding_institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I97018004"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":1.5982,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.830639,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"3","issue":null,"first_page":"1162723","last_page":"1162723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6910799145698547},{"id":"https://openalex.org/keywords/virtual-reality","display_name":"Virtual reality","score":0.586959183216095},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.550177812576294},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.5251854658126831},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4980661869049072},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47042274475097656},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.37385863065719604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20072394609451294},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10303491353988647}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6910799145698547},{"id":"https://openalex.org/C194969405","wikidata":"https://www.wikidata.org/wiki/Q170519","display_name":"Virtual reality","level":2,"score":0.586959183216095},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.550177812576294},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.5251854658126831},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4980661869049072},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47042274475097656},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.37385863065719604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20072394609451294},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10303491353988647},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2023.1162723","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1162723","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1162723/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37181487","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37181487","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10174312","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10174312","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10174312/pdf/fbinf-03-1162723.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f04bc28d913149c6966ff63e69d9c01b","is_oa":true,"landing_page_url":"https://doaj.org/article/f04bc28d913149c6966ff63e69d9c01b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1162723","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1162723","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1162723/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G7106053337","display_name":null,"funder_award_id":"OT2OD026671 OT2OD033756 1U24CA268108-01 OT2 OD030545 U2CDK114886 1U01DK133090-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367321738.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1978555198","https://openalex.org/W1995226545","https://openalex.org/W2002619941","https://openalex.org/W2007268670","https://openalex.org/W2099805804","https://openalex.org/W2112424526","https://openalex.org/W2118689224","https://openalex.org/W2126364917","https://openalex.org/W2144458135","https://openalex.org/W2159687789","https://openalex.org/W2518340594","https://openalex.org/W2561675875","https://openalex.org/W2605897185","https://openalex.org/W2766823279","https://openalex.org/W2768668327","https://openalex.org/W2822996269","https://openalex.org/W2828993090","https://openalex.org/W2896322559","https://openalex.org/W2922020904","https://openalex.org/W2943356805","https://openalex.org/W2970548164","https://openalex.org/W3099559583","https://openalex.org/W3164692211","https://openalex.org/W3206574106","https://openalex.org/W3211141594","https://openalex.org/W3212552860","https://openalex.org/W4200020937","https://openalex.org/W4239907424","https://openalex.org/W4256740660","https://openalex.org/W4311311280","https://openalex.org/W4361205254","https://openalex.org/W6755465240","https://openalex.org/W6829686706","https://openalex.org/W6894132281"],"related_works":["https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W4393084406","https://openalex.org/W606911313","https://openalex.org/W2059650074","https://openalex.org/W4285504728"],"abstract_inverted_index":{"The":[0,37],"Human":[1,10],"Reference":[2],"Atlas":[3,12],"(HRA,":[4],"https://humanatlas.io)":[5],"funded":[6],"by":[7],"the":[8,29,46,87,94,99,109,112,119,154,163,171,230],"NIH":[9],"Biomolecular":[11],"Program":[13],"(HuBMAP,":[14],"https://commonfund.nih.gov/hubmap)":[15],"and":[16,41,52,90,114,128,141,189,206,222,234,244],"other":[17],"projects":[18],"engages":[19],"17":[20],"international":[21],"consortia":[22],"to":[23,68,71,103,118,161,194,214,225],"create":[24],"a":[25,55,77,83,130,158],"spatial":[26,42],"reference":[27,96,178],"of":[28,59,93,98,111,202],"healthy":[30],"adult":[31],"human":[32],"body":[33],"at":[34,249],"single-cell":[35],"resolution.":[36],"specimen,":[38],"biological":[39,217],"structure,":[40],"data":[43,60,74,227,241],"that":[44,132,192],"define":[45],"HRA":[47,120,155,172,240],"are":[48,247],"disparate":[49],"in":[50,76,107,124,129,165],"nature":[51],"benefit":[53],"from":[54,184],"visually":[56],"explicit":[57],"method":[58],"integration.":[61],"Virtual":[62],"reality":[63],"(VR)":[64],"offers":[65],"unique":[66],"means":[67],"enable":[69],"users":[70,224],"explore":[72,162],"complex":[73],"structures":[75],"three-dimensional":[78],"(3D)":[79],"immersive":[80],"environment.":[81,169],"On":[82],"2D":[84,136,140],"desktop":[85],"application,":[86],"3D":[88,95,142,177,207],"spatiality":[89,110],"real-world":[91],"size":[92,127],"organs":[97,113],"atlas":[100,164],"is":[101],"hard":[102],"understand.":[104],"If":[105],"viewed":[106],"VR,":[108],"tissue":[115,182],"blocks":[116,183],"mapped":[117,181],"can":[121,144],"be":[122],"explored":[123],"their":[125],"true":[126],"way":[131],"goes":[133],"beyond":[134],"traditional":[135],"user":[137],"interfaces.":[138],"Added":[139],"visualizations":[143,201],"then":[145],"provide":[146],"data-rich":[147],"context.":[148],"In":[149],"this":[150],"paper,":[151],"we":[152],"present":[153],"Organ":[156,173],"Gallery,":[157],"VR":[159,168],"application":[160],"an":[166],"integrated":[167],"Presently,":[170],"Gallery":[174],"features":[175,199],"55":[176],"organs,":[179],"1,203":[180],"292":[185],"demographically":[186],"diverse":[187],"donors":[188],"15":[190],"providers":[191],"link":[193],"6,000+":[195],"datasets;":[196],"it":[197],"also":[198],"prototype":[200],"cell":[203],"type":[204],"distributions":[205],"protein":[208],"structures.":[209],"We":[210],"outline":[211],"our":[212],"plans":[213],"support":[215],"two":[216],"use":[218],"cases:":[219],"on-ramping":[220],"novice":[221],"expert":[223],"HuBMAP":[226],"available":[228,248],"via":[229],"Data":[231],"Portal":[232],"(https://portal.hubmapconsortium.org),":[233],"quality":[235],"assurance/quality":[236],"control":[237],"(QA/QC)":[238],"for":[239],"providers.":[242],"Code":[243],"onboarding":[245],"materials":[246],"https://github.com/cns-iu/hra-organ-gallery-in-vr.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-24T08:33:08.758527","created_date":"2025-10-10T00:00:00"}
