{"id":"https://openalex.org/W4381249667","doi":"https://doi.org/10.3389/fbinf.2023.1154588","title":"Microbiome maps: Hilbert curve visualizations of metagenomic profiles","display_name":"Microbiome maps: Hilbert curve visualizations of metagenomic profiles","publication_year":2023,"publication_date":"2023-06-19","ids":{"openalex":"https://openalex.org/W4381249667","doi":"https://doi.org/10.3389/fbinf.2023.1154588","pmid":"https://pubmed.ncbi.nlm.nih.gov/37405310"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1154588","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1154588","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1154588/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1154588/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108618193","display_name":"Camilo Valdes","orcid":"https://orcid.org/0009-0001-5860-6035"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Camilo Valdes","raw_affiliation_strings":["Lawrence Livermore National Laboratory, Physical and Life Sciences Directorate, Livermore, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Livermore National Laboratory, Physical and Life Sciences Directorate, Livermore, CA, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013657335","display_name":"Vitalii Stebliankin","orcid":"https://orcid.org/0000-0001-9377-0263"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vitalii Stebliankin","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022556011","display_name":"Daniel Ruiz-Perez","orcid":"https://orcid.org/0000-0002-5622-560X"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Ruiz-Perez","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035490395","display_name":"Ji In Park","orcid":"https://orcid.org/0000-0003-4662-3759"},"institutions":[{"id":"https://openalex.org/I4210109191","display_name":"Kangwon National University Hospital","ror":"https://ror.org/01rf1rj96","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I4210109191"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ji In Park","raw_affiliation_strings":["Department of Medicine, Kangwon National University Hospital, Kangwon National University School of Medicine, Chuncheon, Gangwon-do, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Kangwon National University Hospital, Kangwon National University School of Medicine, Chuncheon, Gangwon-do, Republic of Korea","institution_ids":["https://openalex.org/I4210109191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083042968","display_name":"Hajeong Lee","orcid":"https://orcid.org/0000-0002-1873-1587"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hajeong Lee","raw_affiliation_strings":["Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068890173","display_name":"Giri Narasimhan","orcid":"https://orcid.org/0000-0003-0535-4871"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Giri Narasimhan","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States","Biomolecular Sciences Institute, Florida International University, Miami, FL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Florida International University, Miami, FL, United States","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Biomolecular Sciences Institute, Florida International University, Miami, FL, United States","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068890173","https://openalex.org/A5108618193"],"corresponding_institution_ids":["https://openalex.org/I1282311441","https://openalex.org/I19700959"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.8109,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.73003919,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"3","issue":null,"first_page":"1154588","last_page":"1154588"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8296027183532715},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8212157487869263},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7358231544494629},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48300158977508545},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.4563989043235779},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4322117567062378},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4159426689147949},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3916722238063812},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28306859731674194},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20780834555625916},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.1932273507118225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0883365273475647}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8296027183532715},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8212157487869263},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7358231544494629},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48300158977508545},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.4563989043235779},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4322117567062378},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4159426689147949},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3916722238063812},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28306859731674194},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20780834555625916},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.1932273507118225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0883365273475647},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2023.1154588","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1154588","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1154588/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37405310","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37405310","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10317073","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10317073","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10317073/pdf/fbinf-03-1154588.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1ac0f57778c14f34ad351acde6704114","is_oa":true,"landing_page_url":"https://doaj.org/article/1ac0f57778c14f34ad351acde6704114","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1154588","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1154588","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1154588/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4343739756","display_name":null,"funder_award_id":"Contract DE-AC52-07NA27344","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G5522089832","display_name":null,"funder_award_id":"DE-AC52-07NA27344","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G69709960","display_name":null,"funder_award_id":"Contract DE-AC52-07NA27344","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8374966015","display_name":null,"funder_award_id":"AC52-07NA27344","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G991281326","display_name":null,"funder_award_id":"AC52-07NA27344","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309993","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07"},{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320338286","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4381249667.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W643775974","https://openalex.org/W1589213590","https://openalex.org/W1966912927","https://openalex.org/W1988925586","https://openalex.org/W1995393174","https://openalex.org/W2025841116","https://openalex.org/W2034285706","https://openalex.org/W2043379183","https://openalex.org/W2085926377","https://openalex.org/W2102771000","https://openalex.org/W2107380841","https://openalex.org/W2131415145","https://openalex.org/W2133856765","https://openalex.org/W2143326696","https://openalex.org/W2151350595","https://openalex.org/W2173732482","https://openalex.org/W2273054668","https://openalex.org/W2280650020","https://openalex.org/W2302703011","https://openalex.org/W2330947483","https://openalex.org/W2331300001","https://openalex.org/W2388077321","https://openalex.org/W2511070283","https://openalex.org/W2624135745","https://openalex.org/W2739999456","https://openalex.org/W2810271683","https://openalex.org/W2897603717","https://openalex.org/W2900769793","https://openalex.org/W2930816179","https://openalex.org/W2952261006","https://openalex.org/W2961863736","https://openalex.org/W2962759200","https://openalex.org/W2988258930","https://openalex.org/W2990618091","https://openalex.org/W3141185229","https://openalex.org/W3162300015","https://openalex.org/W4235948177","https://openalex.org/W4242729757","https://openalex.org/W4246954632","https://openalex.org/W4246962530"],"related_works":["https://openalex.org/W2391004329","https://openalex.org/W2761818597","https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2995607319","https://openalex.org/W1222064643","https://openalex.org/W2624135745","https://openalex.org/W1543301402","https://openalex.org/W2315403509","https://openalex.org/W3139084279"],"abstract_inverted_index":{"Abundance":[0],"profiles":[1,23,66,95],"from":[2,8,14,96,128,165],"metagenomic":[3,64,94],"sequencing":[4,98],"data":[5,30],"synthesize":[6],"information":[7],"billions":[9],"of":[10,16,63,93,124,148,168,200,202,241],"sequenced":[11],"reads":[12],"coming":[13],"thousands":[15,201],"microbial":[17,203],"genomes.":[18],"Analyzing":[19],"and":[20,57,91,108,139,171,188,216],"understanding":[21],"these":[22],"can":[24,133,144,178,193,228],"be":[25,179,230],"a":[26,55,68,73,104,110,125,129,166],"challenge":[27],"since":[28],"the":[29,46,51,61,89,119,122,140,207,239],"they":[31],"represent":[32],"are":[33,43,151],"complex.":[34],"Particularly":[35],"challenging":[36],"is":[37,49],"their":[38],"visualization,":[39],"as":[40],"existing":[41],"techniques":[42],"inadequate":[44],"when":[45],"taxa":[47,102,135],"number":[48],"in":[50,118,136,153,174],"thousands.":[52],"We":[53,80,159],"present":[54],"technique,":[56],"accompanying":[58],"software,":[59],"for":[60,88],"visualization":[62,90,224],"abundance":[65,123],"using":[67,103,222],"space-filling":[69,105],"curve":[70],"that":[71,150,218,235],"transforms":[72],"profile":[74],"into":[75,232],"an":[76,83,180],"interactive":[77],"2D":[78],"image.":[79],"created":[81],"Jasper,":[82],"easy":[84],"to":[85,162,183,209,237],"use":[86,160],"tool":[87,182],"exploration":[92],"DNA":[97],"data.":[99],"It":[100],"orders":[101],"Hilbert":[106],"curve,":[107],"creates":[109],"\u201c":[111],"Microbiome":[112],"Map":[113],"\u201d,":[114],"where":[115],"each":[116],"position":[117],"image":[120],"represents":[121],"single":[126],"taxon":[127],"reference":[130,204],"collection.":[131],"Jasper":[132,161],"order":[134],"multiple":[137],"ways,":[138],"resulting":[141],"microbiome":[142,169,176,196],"maps":[143,177,197,227],"highlight":[145],"\u201chot":[146],"spots\u201d":[147],"microbes":[149],"dominant":[152],"taxonomic":[154],"clades":[155],"or":[156],"biological":[157],"conditions.":[158],"visualize":[163,184],"samples":[164],"variety":[167],"studies,":[170],"discuss":[172],"ways":[173],"which":[175],"invaluable":[181],"spatial,":[185],"temporal,":[186],"disease,":[187],"differential":[189],"profiles.":[190],"Our":[191],"approach":[192],"create":[194],"detailed":[195],"involving":[198],"hundreds":[199],"genomes":[205],"with":[206],"potential":[208],"unravel":[210],"latent":[211],"relationships":[212],"(taxonomic,":[213],"spatio-temporal,":[214],"functional,":[215],"other)":[217],"could":[219],"remain":[220],"hidden":[221],"traditional":[223],"techniques.":[225],"The":[226],"also":[229],"converted":[231],"animated":[233],"movies":[234],"bring":[236],"life":[238],"dynamicity":[240],"microbiomes.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-08T08:33:18.762332","created_date":"2023-06-20T00:00:00"}
