{"id":"https://openalex.org/W4378219828","doi":"https://doi.org/10.3389/fbinf.2023.1153800","title":"ModEx: a general purpose computer model exploration system","display_name":"ModEx: a general purpose computer model exploration system","publication_year":2023,"publication_date":"2023-05-25","ids":{"openalex":"https://openalex.org/W4378219828","doi":"https://doi.org/10.3389/fbinf.2023.1153800","pmid":"https://pubmed.ncbi.nlm.nih.gov/37304402"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1153800","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1153800","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1153800/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1153800/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037328673","display_name":"Hamid Younesy","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Hamid Younesy","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092018958","display_name":"Joseph Pober","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joseph Pober","raw_affiliation_strings":["Imperial College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060664606","display_name":"Torsten M\u00f6ller","orcid":"https://orcid.org/0000-0003-1192-0710"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Torsten M\u00f6ller","raw_affiliation_strings":["Research Network Data Science and Faculty of Computer Science, University of Vienna, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Network Data Science and Faculty of Computer Science, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076209108","display_name":"Mohammad M. Karimi","orcid":"https://orcid.org/0000-0001-5017-1252"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mohammad M. Karimi","raw_affiliation_strings":["Comprehensive Cancer Centre, School of Cancer and Pharmaceutical Sciences, Faculty of Life Sciences and Medicine, King's College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comprehensive Cancer Centre, School of Cancer and Pharmaceutical Sciences, Faculty of Life Sciences and Medicine, King's College London, London, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037328673","https://openalex.org/A5060664606"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I18014758"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04414928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":null,"first_page":"1153800","last_page":"1153800"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9535999894142151,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7844363451004028},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.7481940388679504},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7240062952041626},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5967181921005249},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5890971422195435},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5655485391616821},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5149689316749573},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5121278762817383},{"id":"https://openalex.org/keywords/parameter-space","display_name":"Parameter space","score":0.44074803590774536},{"id":"https://openalex.org/keywords/data-exploration","display_name":"Data exploration","score":0.4338884651660919},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.3919185698032379},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3788755536079407},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3466324806213379},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3336603045463562},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3226704001426697},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12966957688331604},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1073165237903595},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08839118480682373}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7844363451004028},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.7481940388679504},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7240062952041626},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5967181921005249},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5890971422195435},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5655485391616821},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5149689316749573},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5121278762817383},{"id":"https://openalex.org/C73586568","wikidata":"https://www.wikidata.org/wiki/Q2600211","display_name":"Parameter space","level":2,"score":0.44074803590774536},{"id":"https://openalex.org/C2780977526","wikidata":"https://www.wikidata.org/wiki/Q42417149","display_name":"Data exploration","level":3,"score":0.4338884651660919},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3919185698032379},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3788755536079407},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3466324806213379},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3336603045463562},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3226704001426697},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12966957688331604},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1073165237903595},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08839118480682373},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2023.1153800","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1153800","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1153800/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37304402","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37304402","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:kclpure.kcl.ac.uk:openaire/6369e15f-a9b1-4c4b-a4c1-0a15e338dbd1","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/6369e15f-a9b1-4c4b-a4c1-0a15e338dbd1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Younesy, H, Pober, J, M\u00f6ller, T & Karimi, M M 2023, 'ModEx: a general purpose computer model exploration system', Frontiers in Bioinformatics, vol. 3, 1153800. https://doi.org/10.3389/fbinf.2023.1153800","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:10249055","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10249055","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10249055/pdf/fbinf-03-1153800.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0f88febe71734028ba0dcc2536ccfd94","is_oa":true,"landing_page_url":"https://doaj.org/article/0f88febe71734028ba0dcc2536ccfd94","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1153800","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1153800","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1153800/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G6550747558","display_name":null,"funder_award_id":"120591","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320323180","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378219828.pdf"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1546952499","https://openalex.org/W1591017069","https://openalex.org/W1937307329","https://openalex.org/W1961845056","https://openalex.org/W1964473154","https://openalex.org/W1978998933","https://openalex.org/W1991676464","https://openalex.org/W2001040013","https://openalex.org/W2021880506","https://openalex.org/W2028390721","https://openalex.org/W2040226816","https://openalex.org/W2060928463","https://openalex.org/W2062937620","https://openalex.org/W2067022444","https://openalex.org/W2068779004","https://openalex.org/W2070494252","https://openalex.org/W2081131647","https://openalex.org/W2094840417","https://openalex.org/W2098417174","https://openalex.org/W2107330811","https://openalex.org/W2113942092","https://openalex.org/W2114104545","https://openalex.org/W2135415614","https://openalex.org/W2141653286","https://openalex.org/W2143867397","https://openalex.org/W2152239989","https://openalex.org/W2157530472","https://openalex.org/W2157963336","https://openalex.org/W2159389176","https://openalex.org/W2160382748","https://openalex.org/W2163132655","https://openalex.org/W2166583218","https://openalex.org/W2167432612","https://openalex.org/W2170984819","https://openalex.org/W2179438025","https://openalex.org/W2226444609","https://openalex.org/W2294831722","https://openalex.org/W2331444830","https://openalex.org/W2465068522","https://openalex.org/W2510911826","https://openalex.org/W2516678343","https://openalex.org/W2518571988","https://openalex.org/W2530800035","https://openalex.org/W2570599740","https://openalex.org/W2587299461","https://openalex.org/W2727915326","https://openalex.org/W2750068734","https://openalex.org/W2751642492","https://openalex.org/W2753676244","https://openalex.org/W2950480778","https://openalex.org/W2963214037","https://openalex.org/W2982437619","https://openalex.org/W4239908238","https://openalex.org/W4294141750","https://openalex.org/W6650658389","https://openalex.org/W6657483926","https://openalex.org/W6667948977","https://openalex.org/W6681083962","https://openalex.org/W6713134421","https://openalex.org/W6743573799","https://openalex.org/W6903761672"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2068608913","https://openalex.org/W2034283238"],"abstract_inverted_index":{"We":[0,69],"present":[1],"a":[2,16,28],"general":[3],"purpose":[4],"visual":[5,29],"analysis":[6,31],"system":[7,23,75],"that":[8],"can":[9],"be":[10],"used":[11],"for":[12,48,65],"exploring":[13],"parameters":[14],"of":[15,18,27,51,73],"variety":[17],"computer":[19],"models.":[20],"Our":[21],"proposed":[22],"offers":[24],"key":[25],"components":[26],"parameter":[30,34,52],"framework":[32],"including":[33],"sampling,":[35],"deriving":[36],"output":[37],"summaries,":[38],"and":[39,86],"an":[40,46],"exploration":[41,54],"interface.":[42],"It":[43],"also":[44],"provides":[45],"API":[47],"rapid":[49],"development":[50],"space":[53],"solutions":[55],"as":[56,58],"well":[57],"the":[59,71],"flexibility":[60],"to":[61],"support":[62],"custom":[63],"workflows":[64],"different":[66],"application":[67,88],"domains.":[68],"evaluate":[70],"effectiveness":[72],"our":[74],"by":[76],"demonstrating":[77],"it":[78],"in":[79,89],"three":[80],"domains:":[81],"data":[82],"mining,":[83],"machine":[84],"learning":[85],"specific":[87],"bioinformatics.":[90]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
