{"id":"https://openalex.org/W4321452423","doi":"https://doi.org/10.3389/fbinf.2023.1127341","title":"Protein domains provide a new layer of information for classifying human variations in rare diseases","display_name":"Protein domains provide a new layer of information for classifying human variations in rare diseases","publication_year":2023,"publication_date":"2023-02-21","ids":{"openalex":"https://openalex.org/W4321452423","doi":"https://doi.org/10.3389/fbinf.2023.1127341","pmid":"https://pubmed.ncbi.nlm.nih.gov/36896423"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1127341","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1127341","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1127341/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1127341/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059295341","display_name":"M\u00e9lanie Corcuff","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M\u00e9lanie Corcuff","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103591332","display_name":"Marc Garibal","orcid":"https://orcid.org/0000-0002-3062-8195"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Garibal","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021308349","display_name":"Jean\u2010Pierre Desvignes","orcid":"https://orcid.org/0000-0003-3142-1994"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Pierre Desvignes","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086751501","display_name":"C Guien","orcid":"https://orcid.org/0000-0003-0172-5129"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line Guien","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009459994","display_name":"Coralie Grattepanche","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Coralie Grattepanche","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105982241","display_name":"Gwena\u00eblle Collod\u2010B\u00e9roud","orcid":"https://orcid.org/0000-0003-4098-6161"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gwena\u00eblle Collod-B\u00e9roud","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055523071","display_name":"Estelle M\u00e9noret","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Estelle M\u00e9noret","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063600106","display_name":"David Salgado","orcid":"https://orcid.org/0000-0002-5905-3591"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David Salgado","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085042865","display_name":"Christophe B\u00e9roud","orcid":"https://orcid.org/0000-0003-2986-8738"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210105722","display_name":"H\u00f4pital d'Enfants","ror":"https://ror.org/01gvaa828","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210105722"]},{"id":"https://openalex.org/I4210162909","display_name":"H\u00f4pital de la Timone","ror":"https://ror.org/05jrr4320","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210087487","https://openalex.org/I4210162909"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christophe B\u00e9roud","raw_affiliation_strings":["Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","Laboratoire de G\u00e9n\u00e9tique M\u00e9dicale, APHM H\u00f4pital d'Enfants de la Timone, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille University, INSERM, MMG, Bioinformatics & Genetics, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique M\u00e9dicale, APHM H\u00f4pital d'Enfants de la Timone, Marseille, France","institution_ids":["https://openalex.org/I4210105722","https://openalex.org/I4210162909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085042865"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210105722","https://openalex.org/I4210162909"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":1953,"currency":"EUR","value_usd":2106},"fwci":0.6552,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.71527768,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"3","issue":null,"first_page":"1127341","last_page":"1127341"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/missense-mutation","display_name":"Missense mutation","score":0.6118366122245789},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5881466269493103},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5333547592163086},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4847366511821747},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4727300703525543},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.46607089042663574},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4467308819293976},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4116690158843994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4097827970981598},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3651811480522156},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.34472817182540894},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3355128765106201},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.2209186851978302},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22034209966659546},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17360350489616394}],"concepts":[{"id":"https://openalex.org/C75563809","wikidata":"https://www.wikidata.org/wiki/Q2656896","display_name":"Missense mutation","level":4,"score":0.6118366122245789},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5881466269493103},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5333547592163086},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4847366511821747},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4727300703525543},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.46607089042663574},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4467308819293976},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4116690158843994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4097827970981598},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3651811480522156},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.34472817182540894},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3355128765106201},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.2209186851978302},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22034209966659546},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17360350489616394},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2023.1127341","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1127341","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1127341/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36896423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36896423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9990413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9990413","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9990413/pdf/fbinf-03-1127341.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:09c230dfc30e468b8da3427bb96c6d89","is_oa":true,"landing_page_url":"https://doaj.org/article/09c230dfc30e468b8da3427bb96c6d89","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1127341","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1127341","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1127341/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4321452423.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1823058240","https://openalex.org/W1985127008","https://openalex.org/W2003873813","https://openalex.org/W2051978340","https://openalex.org/W2087588809","https://openalex.org/W2101412130","https://openalex.org/W2108588173","https://openalex.org/W2112132489","https://openalex.org/W2129448726","https://openalex.org/W2132123037","https://openalex.org/W2145191876","https://openalex.org/W2153544371","https://openalex.org/W2167852161","https://openalex.org/W2174602966","https://openalex.org/W2224056471","https://openalex.org/W2281372923","https://openalex.org/W2320983896","https://openalex.org/W2356454710","https://openalex.org/W2489911374","https://openalex.org/W2531667516","https://openalex.org/W2580887223","https://openalex.org/W2597831855","https://openalex.org/W2606201370","https://openalex.org/W2749031323","https://openalex.org/W2789467029","https://openalex.org/W2897030725","https://openalex.org/W2900359059","https://openalex.org/W2943716176","https://openalex.org/W2949857618","https://openalex.org/W2949860192","https://openalex.org/W2969728870","https://openalex.org/W3011877714","https://openalex.org/W3017283277","https://openalex.org/W3029078495","https://openalex.org/W3039819996","https://openalex.org/W3094436818","https://openalex.org/W3107322429","https://openalex.org/W4210702584","https://openalex.org/W4311581290"],"related_works":["https://openalex.org/W2028741573","https://openalex.org/W2369516681","https://openalex.org/W2024980748","https://openalex.org/W2514476306","https://openalex.org/W1985522665","https://openalex.org/W2055314899","https://openalex.org/W2802677173","https://openalex.org/W2606434372","https://openalex.org/W1736751617","https://openalex.org/W2371211528"],"abstract_inverted_index":{"Introduction:":[0],"Using":[1],"the":[2,6,16,20,34,49,61,149,153,171,178,182,192,209],"ACMG-AMP":[3],"guidelines":[4],"for":[5,97,130,146,159],"interpretation":[7],"of":[8,31,45,51,72,148,161,170,177,184,194,205,211],"sequence":[9],"variants,":[10,117,150],"it":[11],"remains":[12],"difficult":[13],"to":[14,37,74,78,112,152],"meet":[15],"criterion":[17],"associated":[18],"with":[19],"protein":[21,56,80,199],"domain,":[22],"PM1,":[23],"which":[24],"is":[25,41],"assigned":[26,122],"in":[27,43,119,157,198],"only":[28],"about":[29],"10%":[30],"cases,":[32],"whereas":[33,126],"criteria":[35,180],"related":[36],"variant":[38],"frequency,":[39],"PM2/BA1/BS1,":[40],"reported":[42],"50%":[44],"cases.":[46],"To":[47],"improve":[48],"classification":[50,193],"human":[52,115],"missense":[53],"variants":[54,84,95],"using":[55,104],"domains":[57,200],"information,":[58],"we":[59,92],"developed":[60],"DOLPHIN":[62,76,141,165,189],"system":[63],"(":[64],"https://dolphin.mmg-gbit.eu":[65],").":[66],"Methods:":[67],"We":[68,108,137],"used":[69],"Pfam":[70],"alignments":[71],"eukaryotes":[73],"define":[75],"scores":[77],"identify":[79],"domain":[81],"residues":[82],"and":[83,181,207],"that":[85,140,201],"have":[86],"a":[87,123,131,167,185],"significant":[88],"impact.":[89],"In":[90],"parallel,":[91],"enriched":[93],"gnomAD":[94,158],"frequencies":[96],"each":[98],"domains\u2019":[99],"residue.":[100],"These":[101],"were":[102,128],"validated":[103],"ClinVar":[105],"data.":[106],"Results:":[107],"applied":[109],"this":[110],"method":[111],"all":[113],"potential":[114],"transcripts\u2019":[116],"resulting":[118],"30.0%":[120],"being":[121],"PM1":[124,172],"label,":[125],"33.2%":[127],"eligible":[129],"new":[132,186],"benign":[133],"support":[134],"criterion,":[135,173],"BP8.":[136],"also":[138],"showed":[139],"provides":[142],"an":[143,174],"extrapolated":[144],"frequency":[145,155],"31.8%":[147],"compared":[151],"original":[154],"available":[156],"7.6%":[160],"them.":[162],"Discussion:":[163],"Overall,":[164],"allows":[166],"simplified":[168],"use":[169],"expanded":[175],"application":[176],"PM2/BS1":[179],"creation":[183],"BP8":[187],"criterion.":[188],"could":[190],"facilitate":[191],"amino":[195],"acid":[196],"substitutions":[197],"cover":[202],"nearly":[203],"40%":[204],"proteins":[206],"represent":[208],"sites":[210],"most":[212],"pathogenic":[213],"variants.":[214]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
