{"id":"https://openalex.org/W4321248269","doi":"https://doi.org/10.3389/fbinf.2023.1123993","title":"Virulence network of interacting domains of influenza a and mouse proteins","display_name":"Virulence network of interacting domains of influenza a and mouse proteins","publication_year":2023,"publication_date":"2023-02-17","ids":{"openalex":"https://openalex.org/W4321248269","doi":"https://doi.org/10.3389/fbinf.2023.1123993","pmid":"https://pubmed.ncbi.nlm.nih.gov/36875146"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1123993","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1123993","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1123993/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1123993/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000728220","display_name":"Teng Ann Ng","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Teng Ann Ng","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037891222","display_name":"Shamima Rashid","orcid":"https://orcid.org/0000-0002-0157-6525"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Shamima Rashid","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027208445","display_name":"Chee Keong Kwoh","orcid":"https://orcid.org/0000-0002-8547-6387"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee Keong Kwoh","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.3827,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62159979,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"3","issue":null,"first_page":"1123993","last_page":"1123993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.9170019626617432},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5934081673622131},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5836532115936279},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.566365659236908},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5060030817985535},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.48410332202911377},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4709742069244385},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4217681288719177},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3489217758178711},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24355226755142212}],"concepts":[{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.9170019626617432},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5934081673622131},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5836532115936279},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.566365659236908},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5060030817985535},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.48410332202911377},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4709742069244385},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4217681288719177},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3489217758178711},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24355226755142212}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2023.1123993","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1123993","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1123993/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36875146","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36875146","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9982101","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9982101","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3c8f56458ba54a06a6dfca9adbea6bf7","is_oa":true,"landing_page_url":"https://doaj.org/article/3c8f56458ba54a06a6dfca9adbea6bf7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/173178","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/173178","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1123993","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1123993","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1123993/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.800000011920929}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4321248269.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1461570683","https://openalex.org/W1541308622","https://openalex.org/W2015127006","https://openalex.org/W2027134752","https://openalex.org/W2049762266","https://openalex.org/W2058829512","https://openalex.org/W2061833373","https://openalex.org/W2119611042","https://openalex.org/W2125725297","https://openalex.org/W2131330781","https://openalex.org/W2161062388","https://openalex.org/W2161811112","https://openalex.org/W2282909188","https://openalex.org/W2344533005","https://openalex.org/W2346924165","https://openalex.org/W2465613542","https://openalex.org/W2740784254","https://openalex.org/W2765549458","https://openalex.org/W2766125601","https://openalex.org/W2775569101","https://openalex.org/W2776499041","https://openalex.org/W2791709730","https://openalex.org/W2866458126","https://openalex.org/W2893068856","https://openalex.org/W2900701906","https://openalex.org/W2910361792","https://openalex.org/W2947296015","https://openalex.org/W2947540360","https://openalex.org/W2951679282","https://openalex.org/W2966549618","https://openalex.org/W2974221545","https://openalex.org/W2977707586","https://openalex.org/W2991305350","https://openalex.org/W2997095195","https://openalex.org/W2998220730","https://openalex.org/W3023142893","https://openalex.org/W3041340429","https://openalex.org/W3045012301","https://openalex.org/W3048090444","https://openalex.org/W3088969115","https://openalex.org/W3113166515","https://openalex.org/W3141769974","https://openalex.org/W3157447802","https://openalex.org/W3188076481","https://openalex.org/W3211739003","https://openalex.org/W4220887385","https://openalex.org/W4224209556","https://openalex.org/W4226456712","https://openalex.org/W4291232682","https://openalex.org/W6628605772"],"related_works":["https://openalex.org/W3045355607","https://openalex.org/W2061872883","https://openalex.org/W2159527899","https://openalex.org/W2035643332","https://openalex.org/W2086778880","https://openalex.org/W2093242756","https://openalex.org/W2070366663","https://openalex.org/W2170463474","https://openalex.org/W2349061742","https://openalex.org/W971818575"],"abstract_inverted_index":{"There":[0],"exist":[1],"several":[2],"databases":[3,32],"that":[4,99],"provide":[5,11],"virus-host":[6,16],"protein":[7,17,26,141,199,215],"interactions.":[8],"While":[9],"most":[10],"curated":[12],"records":[13,69],"of":[14,36,40,48,52,75,85,105,122,126,137],"interacting":[15,134,198],"pairs,":[18],"information":[19,112,178],"on":[20],"the":[21,41,71,102,110,153,175],"strain-specific":[22,194],"virulence":[23,111,164,177,195],"factors":[24,107],"or":[25],"domains":[27,142],"involved,":[28],"is":[29,224],"lacking.":[30],"Some":[31],"offer":[33],"incomplete":[34],"coverage":[35],"influenza":[37,72,91,188,210],"strains":[38],"because":[39],"need":[42],"to":[43,159,205],"sift":[44],"through":[45,214],"vast":[46],"amounts":[47],"literature":[49],"(including":[50],"those":[51],"major":[53],"viruses":[54],"including":[55],"HIV":[56],"and":[57,95,139,220],"Dengue,":[58],"besides":[59],"others).":[60],"None":[61],"have":[62],"offered":[63],"complete,":[64],"strain":[65],"specific":[66],"protein-protein":[67],"interaction":[68],"for":[70,208],"A":[73,92,189],"group":[74],"viruses.":[76],"In":[77],"this":[78],"paper,":[79],"we":[80,131],"present":[81],"a":[82,118,171],"comprehensive":[83],"network":[84,136,165,185],"predicted":[86],"domain-domain":[87],"interaction(s)":[88],"(DDI)":[89],"between":[90,218],"virus":[93],"(IAV)":[94],"mouse":[96,138],"host":[97,221],"proteins,":[98],"will":[100,186],"allow":[101],"systematic":[103],"study":[104],"disease":[106,190],"by":[108,192],"taking":[109],"(lethal":[113],"dose)":[114],"into":[115],"account.":[116],"From":[117],"previously":[119],"published":[120],"dataset":[121],"lethal":[123],"dose":[124],"studies":[125],"IAV":[127],"infection":[128,211],"in":[129],"mice,":[130],"constructed":[132],"an":[133],"domain":[135,216],"viral":[140,219],"as":[143],"nodes":[144],"with":[145,152,174,197],"weighted":[146],"edges.":[147],"The":[148,163,184],"edges":[149],"were":[150],"scored":[151],"Domain":[154],"Interaction":[155],"Statistical":[156],"Potential":[157],"(DISPOT)":[158],"indicate":[160],"putative":[161],"DDI.":[162],"can":[166,202],"be":[167],"easily":[168],"navigated":[169],"via":[170],"web":[172],"browser,":[173],"associated":[176],"(LD":[179],"50":[180],"values)":[181],"prominently":[182],"displayed.":[183],"aid":[187],"modeling":[191],"providing":[193],"levels":[196],"domains.":[200],"It":[201,223],"possibly":[203],"contribute":[204],"computational":[206],"methods":[207],"uncovering":[209],"mechanisms":[212],"mediated":[213],"interactions":[217],"proteins.":[222],"available":[225],"at":[226],"https://iav-ppi.onrender.com/home":[227],".":[228]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
