{"id":"https://openalex.org/W4388616634","doi":"https://doi.org/10.32614/rj-2023-055","title":"A Workflow for Estimating and Visualising Excess Mortality During the COVID-19 Pandemic","display_name":"A Workflow for Estimating and Visualising Excess Mortality During the COVID-19 Pandemic","publication_year":2023,"publication_date":"2023-11-08","ids":{"openalex":"https://openalex.org/W4388616634","doi":"https://doi.org/10.32614/rj-2023-055"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2023-055","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-055","pdf_url":"https://journal.r-project.org/articles/RJ-2023-055/RJ-2023-055.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal.r-project.org/articles/RJ-2023-055/RJ-2023-055.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074562811","display_name":"Garyfallos Konstantinoudis","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Garyfallos Konstantinoudis","raw_affiliation_strings":["MRC Centre for Environment and Health, Imperial College London,"],"affiliations":[{"raw_affiliation_string":"MRC Centre for Environment and Health, Imperial College London,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061617652","display_name":"Virgilio G\u00f3mez\u2010Rubio","orcid":"https://orcid.org/0000-0002-4791-3072"},"institutions":[{"id":"https://openalex.org/I79189158","display_name":"University of Castilla-La Mancha","ror":"https://ror.org/05r78ng12","country_code":"ES","type":"education","lineage":["https://openalex.org/I79189158"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Virgilio G\u00f3mez-Rubio","raw_affiliation_strings":["Departamento de Matem\u00e1ticas, Escuela T\u00e9cnica Superior de\nIngenier$\\acute{\\imath}$a Industrial-Albacete, Universidad de\nCastilla-La Mancha,"],"affiliations":[{"raw_affiliation_string":"Departamento de Matem\u00e1ticas, Escuela T\u00e9cnica Superior de\nIngenier$\\acute{\\imath}$a Industrial-Albacete, Universidad de\nCastilla-La Mancha,","institution_ids":["https://openalex.org/I79189158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008108771","display_name":"Michela Cameletti","orcid":"https://orcid.org/0000-0002-6502-7779"},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michela Cameletti","raw_affiliation_strings":["Department of Economics, University of Bergamo,"],"affiliations":[{"raw_affiliation_string":"Department of Economics, University of Bergamo,","institution_ids":["https://openalex.org/I11039511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022528309","display_name":"Monica Pirani","orcid":"https://orcid.org/0000-0002-6418-3278"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Monica Pirani","raw_affiliation_strings":["MRC Centre for Environment and Health, Imperial College London,"],"affiliations":[{"raw_affiliation_string":"MRC Centre for Environment and Health, Imperial College London,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023729638","display_name":"Gianluca Baio","orcid":"https://orcid.org/0000-0003-4314-2570"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gianluca Baio","raw_affiliation_strings":["Department of Statistical Sciences, University College London,"],"affiliations":[{"raw_affiliation_string":"Department of Statistical Sciences, University College London,","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057019833","display_name":"Marta Blangiardo","orcid":"https://orcid.org/0000-0002-1621-704X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marta Blangiardo","raw_affiliation_strings":["MRC Centre for Environment and Health, Imperial College London,"],"affiliations":[{"raw_affiliation_string":"MRC Centre for Environment and Health, Imperial College London,","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5074562811"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":1.0923,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.75033668,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"15","issue":"2","first_page":"89","last_page":"104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10235","display_name":"Health disparities and outcomes","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/3306","display_name":"Health"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.8822587728500366},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8199445009231567},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6776177883148193},{"id":"https://openalex.org/keywords/excess-mortality","display_name":"Excess mortality","score":0.656287670135498},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5134423971176147},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.47969409823417664},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44905805587768555},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.44236546754837036},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4169424772262573},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.4138643741607666},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.38056516647338867},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.24264875054359436},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23578274250030518},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.14424076676368713},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.12531769275665283},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1193859875202179},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.10569742321968079}],"concepts":[{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.8822587728500366},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8199445009231567},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6776177883148193},{"id":"https://openalex.org/C3018792137","wikidata":"https://www.wikidata.org/wiki/Q6914399","display_name":"Excess mortality","level":3,"score":0.656287670135498},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5134423971176147},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.47969409823417664},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44905805587768555},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.44236546754837036},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4169424772262573},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.4138643741607666},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.38056516647338867},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.24264875054359436},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23578274250030518},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.14424076676368713},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.12531769275665283},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1193859875202179},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.10569742321968079},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.32614/rj-2023-055","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-055","pdf_url":"https://journal.r-project.org/articles/RJ-2023-055/RJ-2023-055.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:aisberg.unibg.it:10446/259269","is_oa":true,"landing_page_url":"https://hdl.handle.net/10446/259269","pdf_url":"https://aisberg.unibg.it/bitstream/10446/259269/1/RJ-2023-055.pdf","source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10184354","is_oa":true,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10184354/","pdf_url":"https://discovery.ucl.ac.uk/id/eprint/10184354/1/RJ-2023-055.pdf","source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   The R Journal , 15  (2)   pp. 89-104.   (2023)      ","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.32614/rj-2023-055","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-055","pdf_url":"https://journal.r-project.org/articles/RJ-2023-055/RJ-2023-055.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1502031688","display_name":null,"funder_award_id":"MR/S019669/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G229074222","display_name":null,"funder_award_id":"MR/T025352/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2804002764","display_name":"Evaluating the burden of climate-related respiratory disease using high resolution spatiotemporal models","funder_award_id":"MR/T025352/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G3378117337","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G3669618554","display_name":null,"funder_award_id":"MR/T025352","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4140885311","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G4531285500","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320283","funder_display_name":"Imperial College London"},{"id":"https://openalex.org/G5795757986","display_name":null,"funder_award_id":"R01HD092580-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7407982985","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320324466","display_name":"Universidad de Castilla-La Mancha","ror":"https://ror.org/05r78ng12"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320336039","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388616634.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1487139063","https://openalex.org/W1520053542","https://openalex.org/W1810028515","https://openalex.org/W1989730355","https://openalex.org/W2004014822","https://openalex.org/W2050272999","https://openalex.org/W2144898279","https://openalex.org/W2343968360","https://openalex.org/W2804233742","https://openalex.org/W2888793033","https://openalex.org/W2995224805","https://openalex.org/W3027372593","https://openalex.org/W3038501713","https://openalex.org/W3092143711","https://openalex.org/W3093011094","https://openalex.org/W3093725770","https://openalex.org/W3125353637","https://openalex.org/W3130986213","https://openalex.org/W3147310958","https://openalex.org/W3163515137","https://openalex.org/W3163617311","https://openalex.org/W3163691554","https://openalex.org/W3168529942","https://openalex.org/W3206359105","https://openalex.org/W4210252063","https://openalex.org/W4210655082","https://openalex.org/W4220877764","https://openalex.org/W4249963577","https://openalex.org/W4299408931","https://openalex.org/W4313640548","https://openalex.org/W4386302732","https://openalex.org/W4389517692","https://openalex.org/W4399496537","https://openalex.org/W4399521722","https://openalex.org/W4399523730","https://openalex.org/W4399568676","https://openalex.org/W4399569425","https://openalex.org/W4399570526","https://openalex.org/W4399579029","https://openalex.org/W4399583953","https://openalex.org/W4399612697","https://openalex.org/W4399636352","https://openalex.org/W4399638148","https://openalex.org/W4399648536","https://openalex.org/W4399648717","https://openalex.org/W4399650795","https://openalex.org/W6778150030"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W3191889551","https://openalex.org/W4361301468","https://openalex.org/W3160433572"],"abstract_inverted_index":{"COVID-19":[0],"related":[1],"deaths":[2,31,49,107],"estimates":[3],"underestimate":[4],"the":[5,27,33,40,73,76,152],"pandemic":[6,41,153],"burden":[7,154],"on":[8,51,130],"mortality":[9,19,95],"because":[10],"they":[11],"suffer":[12],"from":[13],"completeness":[14],"and":[15,55,72,92,119,125,136,145,155],"accuracy":[16],"issues.":[17],"Excess":[18],"is":[20,65,115],"a":[21,86,102,142],"popular":[22],"alternative,":[23],"as":[24,133],"it":[25,141],"compares":[26],"observed":[28],"number":[29,34,47],"of":[30,48,75,151],"versus":[32],"that":[35],"would":[36],"be":[37],"expected":[38,46],"if":[39],"did":[42],"not":[43],"occur.":[44],"The":[45,112],"depends":[50],"population":[52],"trends,":[53],"temperature,":[54],"spatio-temporal":[56],"patterns.":[57],"In":[58,81],"addition":[59],"to":[60,67,117],"this,":[61],"high":[62,97],"geographical":[63,98],"resolution":[64],"required":[66],"examine":[68],"within":[69],"country":[70],"trends":[71],"effectiveness":[74],"different":[77,123],"public":[78],"health":[79],"policies.":[80],"this":[82],"tutorial,":[83],"we":[84],"propose":[85],"workflow":[87,114,147],"using":[88],"R":[89],"for":[90,121,148],"estimating":[91,105],"visualising":[93],"excess":[94,106],"at":[96],"resolution.":[99],"We":[100],"show":[101],"case":[103],"study":[104],"during":[108],"2020":[109],"in":[110],"Italy.":[111],"proposed":[113],"fast":[116],"implement":[118],"allows":[120],"combining":[122],"models":[124],"presenting":[126],"aggregated":[127],"results":[128],"based":[129],"factors":[131],"such":[132],"age,":[134],"sex,":[135],"spatial":[137],"location.":[138],"This":[139],"makes":[140],"particularly":[143],"powerful":[144],"appealing":[146],"online":[149],"monitoring":[150],"timely":[156],"policy":[157],"making.":[158]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2023-11-13T00:00:00"}
