{"id":"https://openalex.org/W4388213070","doi":"https://doi.org/10.32614/rj-2023-027","title":"Likelihood Ratio Test-Based Drug Safety Assessment using R Package \\pkg{pvLRT}","display_name":"Likelihood Ratio Test-Based Drug Safety Assessment using R Package \\pkg{pvLRT}","publication_year":2023,"publication_date":"2023-08-26","ids":{"openalex":"https://openalex.org/W4388213070","doi":"https://doi.org/10.32614/rj-2023-027"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2023-027","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-027","pdf_url":"https://journal.r-project.org/articles/RJ-2023-027/RJ-2023-027.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal.r-project.org/articles/RJ-2023-027/RJ-2023-027.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002064610","display_name":"Saptarshi Chakraborty","orcid":"https://orcid.org/0000-0002-3121-9174"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Saptarshi Chakraborty","raw_affiliation_strings":["Department of Biostatistics, SUNY University at Buffalo"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, SUNY University at Buffalo","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009202015","display_name":"Marianthi Markatou","orcid":"https://orcid.org/0000-0002-1453-8229"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marianthi Markatou","raw_affiliation_strings":["Department of Biostatistics, SUNY University at Buffalo"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, SUNY University at Buffalo","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036429950","display_name":"Robert Ball","orcid":"https://orcid.org/0000-0002-1609-7420"},"institutions":[{"id":"https://openalex.org/I1333606569","display_name":"Center for Drug Evaluation and Research","ror":"https://ror.org/00yf3tm42","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070","https://openalex.org/I1333606569"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Ball","raw_affiliation_strings":["Center for Drug Evaluation and Research, U.S. Food and Drug Administration"],"affiliations":[{"raw_affiliation_string":"Center for Drug Evaluation and Research, U.S. Food and Drug Administration","institution_ids":["https://openalex.org/I1333606569","https://openalex.org/I1320320070"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002064610"],"corresponding_institution_ids":["https://openalex.org/I63190737"],"apc_list":null,"apc_paid":null,"fwci":0.3477,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64866441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"15","issue":"1","first_page":"101","last_page":"121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11423","display_name":"Pesticide Residue Analysis and Safety","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adverse-event-reporting-system","display_name":"Adverse Event Reporting System","score":0.7363708019256592},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7357905507087708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7031564712524414},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6612712144851685},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.500596284866333},{"id":"https://openalex.org/keywords/product","display_name":"Product (mathematics)","score":0.483737975358963},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4725247025489807},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4422151446342468},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41139742732048035},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36312335729599},{"id":"https://openalex.org/keywords/food-and-drug-administration","display_name":"Food and drug administration","score":0.25386732816696167},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17044728994369507},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.16662946343421936},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.13954001665115356},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07761862874031067},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07463374733924866}],"concepts":[{"id":"https://openalex.org/C2777105317","wikidata":"https://www.wikidata.org/wiki/Q4686710","display_name":"Adverse Event Reporting System","level":3,"score":0.7363708019256592},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7357905507087708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7031564712524414},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6612712144851685},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.500596284866333},{"id":"https://openalex.org/C90673727","wikidata":"https://www.wikidata.org/wiki/Q901718","display_name":"Product (mathematics)","level":2,"score":0.483737975358963},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4725247025489807},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4422151446342468},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41139742732048035},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36312335729599},{"id":"https://openalex.org/C3018890749","wikidata":"https://www.wikidata.org/wiki/Q204711","display_name":"Food and drug administration","level":2,"score":0.25386732816696167},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17044728994369507},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.16662946343421936},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.13954001665115356},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07761862874031067},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07463374733924866},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.32614/rj-2023-027","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-027","pdf_url":"https://journal.r-project.org/articles/RJ-2023-027/RJ-2023-027.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.32614/rj-2023-027","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-027","pdf_url":"https://journal.r-project.org/articles/RJ-2023-027/RJ-2023-027.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388213070.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1518016665","https://openalex.org/W1794362325","https://openalex.org/W1810028515","https://openalex.org/W1989756416","https://openalex.org/W2022904609","https://openalex.org/W2039594635","https://openalex.org/W2110065044","https://openalex.org/W2146071810","https://openalex.org/W2158799342","https://openalex.org/W2345451465","https://openalex.org/W2788995333","https://openalex.org/W2990427812","https://openalex.org/W3000088515","https://openalex.org/W3154748320","https://openalex.org/W4298087064","https://openalex.org/W4298872162","https://openalex.org/W4301505765","https://openalex.org/W4302063968","https://openalex.org/W4399526738","https://openalex.org/W4399584424","https://openalex.org/W4399612019","https://openalex.org/W4399648717","https://openalex.org/W4399650795"],"related_works":["https://openalex.org/W4295259543","https://openalex.org/W2909110953","https://openalex.org/W3099677897","https://openalex.org/W4386731192","https://openalex.org/W4231704780","https://openalex.org/W1991993840","https://openalex.org/W3217734091","https://openalex.org/W2809324377","https://openalex.org/W1970401253","https://openalex.org/W1511772879"],"abstract_inverted_index":{"Medical":[0],"product":[1,134],"safety":[2,135],"continues":[3],"to":[4,83,114,125],"be":[5],"a":[6,101],"key":[7],"concern":[8],"of":[9,36,40,51,90,103,118,131],"the":[10,21,49,88,119,127],"twenty-first":[11],"century.":[12],"Several":[13],"spontaneous":[14],"adverse":[15,27],"events":[16,28],"reporting":[17,38],"databases":[18,47],"established":[19],"across":[20],"world":[22],"continuously":[23],"collect":[24],"and":[25,110,143],"archive":[26],"data":[29],"on":[30],"various":[31,108],"medical":[32],"products.":[33],"Determining":[34],"signals":[35],"disproportional":[37],"(SDR)":[39],"product/adverse":[41],"event":[42],"pairs":[43],"from":[44,138],"these":[45],"large-scale":[46],"require":[48],"use":[50,89,117],"principled":[52],"statistical":[53],"techniques.":[54],"Likelihood":[55],"ratio":[56],"test":[57],"(LRT)-based":[58],"approaches":[59],"are":[60,123],"particularly":[61],"noteworthy":[62],"in":[63],"this":[64],"context":[65],"as":[66],"they":[67],"permit":[68],"objective":[69],"SDR":[70],"detection":[71],"without":[72],"requiring":[73],"ad":[74],"hoc":[75],"thresholds.":[76],"However,":[77],"their":[78],"implementation":[79],"is":[80],"non-trivial":[81],"due":[82],"analytical":[84],"complexities,":[85],"which":[86,99],"necessitate":[87],"computation-heavy":[91],"methods.":[92],"Here":[93],"we":[94],"introduce":[95],"R":[96],"package":[97,128],"pvLRT":[98],"implements":[100],"suite":[102],"LRT":[104],"approaches,":[105],"along":[106],"with":[107],"post-processing":[109],"graphical":[111],"summary":[112],"functions,":[113],"facilitate":[115],"simplified":[116],"methodologies.":[120],"Detailed":[121],"examples":[122],"provided":[124],"illustrate":[126],"through":[129],"analyses":[130],"three":[132],"real":[133],"datasets":[136],"obtained":[137],"publicly":[139],"available":[140],"FDA":[141],"FAERS":[142],"VAERS":[144],"databases.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
