{"id":"https://openalex.org/W4322628706","doi":"https://doi.org/10.32614/rj-2023-008","title":"dycdtools: an R Package for Assisting Calibration and Visualising Outputs of an Aquatic Ecosystem Model","display_name":"dycdtools: an R Package for Assisting Calibration and Visualising Outputs of an Aquatic Ecosystem Model","publication_year":2023,"publication_date":"2023-02-10","ids":{"openalex":"https://openalex.org/W4322628706","doi":"https://doi.org/10.32614/rj-2023-008"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2023-008","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-008","pdf_url":"https://journal.r-project.org/articles/RJ-2023-008/RJ-2023-008.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal.r-project.org/articles/RJ-2023-008/RJ-2023-008.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086284145","display_name":"Songyan Yu","orcid":"https://orcid.org/0000-0001-5765-7060"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Songyan Yu","raw_affiliation_strings":["Griffith University"],"affiliations":[{"raw_affiliation_string":"Griffith University","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112066691","display_name":"Christopher McBride","orcid":null},"institutions":[{"id":"https://openalex.org/I52179390","display_name":"University of Waikato","ror":"https://ror.org/013fsnh78","country_code":"NZ","type":"education","lineage":["https://openalex.org/I52179390"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Christopher G. McBride","raw_affiliation_strings":["University of Waikato"],"affiliations":[{"raw_affiliation_string":"University of Waikato","institution_ids":["https://openalex.org/I52179390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012712030","display_name":"Marieke A. Frassl","orcid":"https://orcid.org/0000-0001-8843-8477"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Marieke A. Frassl","raw_affiliation_strings":["Griffith University"],"affiliations":[{"raw_affiliation_string":"Griffith University","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034553808","display_name":"Matthew R. Hipsey","orcid":"https://orcid.org/0000-0001-8386-4354"},"institutions":[{"id":"https://openalex.org/I177877127","display_name":"The University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Matthew R. Hipsey","raw_affiliation_strings":["The University of Western Australia"],"affiliations":[{"raw_affiliation_string":"The University of Western Australia","institution_ids":["https://openalex.org/I177877127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082013090","display_name":"David P. Hamilton","orcid":"https://orcid.org/0000-0002-9341-8777"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David P. Hamilton","raw_affiliation_strings":["Griffith University"],"affiliations":[{"raw_affiliation_string":"Griffith University","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086284145"],"corresponding_institution_ids":["https://openalex.org/I11701301"],"apc_list":null,"apc_paid":null,"fwci":0.1746,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5127641,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"14","issue":"4","first_page":"235","last_page":"251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10330","display_name":"Hydrology and Watershed Management Studies","score":0.9186999797821045,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11490","display_name":"Hydrological Forecasting Using AI","score":0.9065999984741211,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calibration","display_name":"Calibration","score":0.7853608131408691},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7627002000808716},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7270969152450562},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5891717076301575},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48201504349708557},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4670865535736084},{"id":"https://openalex.org/keywords/goodness-of-fit","display_name":"Goodness of fit","score":0.45295676589012146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.27828362584114075},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.20685604214668274},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.17323288321495056},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10651177167892456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09592419862747192}],"concepts":[{"id":"https://openalex.org/C165838908","wikidata":"https://www.wikidata.org/wiki/Q736777","display_name":"Calibration","level":2,"score":0.7853608131408691},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7627002000808716},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7270969152450562},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5891717076301575},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48201504349708557},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4670865535736084},{"id":"https://openalex.org/C132480984","wikidata":"https://www.wikidata.org/wiki/Q2034239","display_name":"Goodness of fit","level":2,"score":0.45295676589012146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27828362584114075},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.20685604214668274},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.17323288321495056},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10651177167892456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09592419862747192},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.32614/rj-2023-008","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-008","pdf_url":"https://journal.r-project.org/articles/RJ-2023-008/RJ-2023-008.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/422075","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/422075","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.32614/rj-2023-008","is_oa":true,"landing_page_url":"http://dx.doi.org/10.32614/rj-2023-008","pdf_url":"https://journal.r-project.org/articles/RJ-2023-008/RJ-2023-008.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320981","display_name":"Griffith University","ror":"https://ror.org/02sc3r913"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4322628706.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1410617881","https://openalex.org/W1541288193","https://openalex.org/W1641168495","https://openalex.org/W1951018914","https://openalex.org/W1982074442","https://openalex.org/W1998613416","https://openalex.org/W2000327189","https://openalex.org/W2016107349","https://openalex.org/W2020893725","https://openalex.org/W2029761451","https://openalex.org/W2036399260","https://openalex.org/W2050954755","https://openalex.org/W2051553031","https://openalex.org/W2057710290","https://openalex.org/W2071629571","https://openalex.org/W2075833623","https://openalex.org/W2086548763","https://openalex.org/W2101287886","https://openalex.org/W2103948957","https://openalex.org/W2135264057","https://openalex.org/W2147746661","https://openalex.org/W2149160185","https://openalex.org/W2150303196","https://openalex.org/W2158046816","https://openalex.org/W2166848550","https://openalex.org/W2171633038","https://openalex.org/W2244124984","https://openalex.org/W2287992427","https://openalex.org/W2294930730","https://openalex.org/W2468940274","https://openalex.org/W2576471378","https://openalex.org/W2724817047","https://openalex.org/W2754249557","https://openalex.org/W2769117689","https://openalex.org/W2774271870","https://openalex.org/W2781377456","https://openalex.org/W2914469436","https://openalex.org/W2924685180","https://openalex.org/W2985138592","https://openalex.org/W3011281671","https://openalex.org/W3027646416","https://openalex.org/W4288400169"],"related_works":["https://openalex.org/W1541538682","https://openalex.org/W2068608913","https://openalex.org/W2050686036","https://openalex.org/W2097522327","https://openalex.org/W3124914020","https://openalex.org/W3167233239","https://openalex.org/W2141033859","https://openalex.org/W2493307909","https://openalex.org/W2077542787","https://openalex.org/W2156434174"],"abstract_inverted_index":{"The":[0,52,85,104],"high":[1],"complexity":[2],"of":[3,12,19,64,66],"aquatic":[4,48],"ecosystem":[5,49],"models":[6],"(AEMs)":[7],"necessitates":[8],"a":[9,45,61,126,147],"large":[10,62],"number":[11,63],"parameters":[13],"that":[14,38],"need":[15],"calibration,":[16],"and":[17,22,41,69,102,112,117,140],"visualisation":[18],"their":[20],"multifaceted":[21],"multi-layered":[23],"simulation":[24],"results":[25,145],"is":[26,107,131],"necessary":[27],"for":[28,44,73,115,122,138],"effective":[29],"communication.":[30],"Here":[31],"we":[32],"present":[33],"an":[34],"R":[35],"package":[36,58,106,130],"\"dycdtools\"":[37,105],"contains":[39],"calibration":[40,53,111,136],"post-processing":[42,86,113],"tools":[43],"widely":[46],"applied":[47],"model":[50,144],"(DYRESM-CAEDYM).":[51],"assistant":[54],"function":[55],"within":[56],"the":[57,108,135],"automatically":[59],"tests":[60],"combinations":[65],"parameter":[67,79,83],"values":[68,72],"returns":[70],"corresponding":[71],"goodness-of-fit,":[74],"allowing":[75],"users":[76,89,139],"to":[77,90,133,141],"narrow":[78],"ranges":[80],"or":[81],"optimise":[82],"values.":[84],"functions":[87],"enable":[88],"visualise":[91],"modelling":[92],"outputs":[93],"in":[94],"four":[95],"ways:":[96],"as":[97],"contours,":[98],"profiles,":[99],"time":[100],"series,":[101],"scatterplots.":[103],"first":[109],"open-source":[110],"tool":[114],"DYRESM-CAEDYM,":[116],"can":[118],"also":[119],"be":[120],"adjusted":[121],"other":[123],"AEMs":[124],"with":[125,146],"similar":[127],"structure.":[128],"This":[129],"useful":[132],"reduce":[134],"burden":[137],"effectively":[142],"communicate":[143],"broader":[148],"community.":[149]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-01-21T23:30:37.877113","created_date":"2025-10-10T00:00:00"}
