{"id":"https://openalex.org/W3197801096","doi":"https://doi.org/10.32614/rj-2021-070","title":"survidm: An R package for Inference and Prediction in an Illness-Death Model","display_name":"survidm: An R package for Inference and Prediction in an Illness-Death Model","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3197801096","doi":"https://doi.org/10.32614/rj-2021-070","mag":"3197801096"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2021-070","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2021-070","pdf_url":"https://journal.r-project.org/archive/2021/RJ-2021-070/RJ-2021-070.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal.r-project.org/archive/2021/RJ-2021-070/RJ-2021-070.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011076502","display_name":"Gustavo Soutinho","orcid":"https://orcid.org/0000-0002-0559-1327"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]},{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES","PT"],"is_corresponding":true,"raw_author_name":"Gustavo Soutinho","raw_affiliation_strings":["Department of Statistics and OR,","University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","Institute of Public Health of the University of Porto (ISPUP)","Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal"],"affiliations":[{"raw_affiliation_string":"Department of Statistics and OR,","institution_ids":[]},{"raw_affiliation_string":"University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Institute of Public Health of the University of Porto (ISPUP)","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016679368","display_name":"Marta Sestelo","orcid":"https://orcid.org/0000-0003-4284-6509"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["ES","PT"],"is_corresponding":false,"raw_author_name":"Marta Sestelo","raw_affiliation_strings":["Institute of Public Health of the University of Porto (ISPUP)","Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal","SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","Department of Statistics and OR,"],"affiliations":[{"raw_affiliation_string":"Institute of Public Health of the University of Porto (ISPUP)","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal","institution_ids":["https://openalex.org/I99682543"]},{"raw_affiliation_string":"SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Department of Statistics and OR,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040675333","display_name":"Lu\u00eds Meira\u2010Machado","orcid":"https://orcid.org/0000-0002-8577-7665"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]},{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES","PT"],"is_corresponding":false,"raw_author_name":"Lu\u00eds Meira-Machado","raw_affiliation_strings":["Institute of Public Health of the University of Porto (ISPUP)","Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal","University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","Department of Statistics and OR,"],"affiliations":[{"raw_affiliation_string":"Institute of Public Health of the University of Porto (ISPUP)","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Department of Mathematics & Centre of Mathematics University of Minho Campus de Azur\u00e9m, 4800-058, Guimar\u00e3es, Portugal","institution_ids":["https://openalex.org/I99682543"]},{"raw_affiliation_string":"University of Porto Rua das Taipas no. 135, 4050-600, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"SiDOR research group & CITMaga, University of Vigo Campus Lagoas-Marcosende, 36310 -Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Statistics and OR,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011076502"],"corresponding_institution_ids":["https://openalex.org/I182534213","https://openalex.org/I6289922","https://openalex.org/I99682543"],"apc_list":null,"apc_paid":null,"fwci":0.6998,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.76512635,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"13","issue":"2","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7675204277038574},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6259770393371582},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.435963898897171},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3251596689224243},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1316426694393158}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7675204277038574},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6259770393371582},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.435963898897171},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3251596689224243},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1316426694393158}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.32614/rj-2021-070","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2021-070","pdf_url":"https://journal.r-project.org/archive/2021/RJ-2021-070/RJ-2021-070.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:digitalcommons.unl.edu:r-journal-1009","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/r-journal/103","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The R Journal","raw_type":"text"},{"id":"pmh:oai:repositorio-aberto.up.pt:10216/149522","is_oa":true,"landing_page_url":"https://hdl.handle.net/10216/149522","pdf_url":null,"source":{"id":"https://openalex.org/S4306401934","display_name":"Open Repository of the University of Porto (University of Porto)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I182534213","host_organization_name":"Universidade do Porto","host_organization_lineage":["https://openalex.org/I182534213"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/79140","is_oa":true,"landing_page_url":"https://hdl.handle.net/1822/79140","pdf_url":null,"source":{"id":"https://openalex.org/S4306400354","display_name":"Reposit\u00f3riUM (Universidade do Minho)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99682543","host_organization_name":"University of Minho","host_organization_lineage":["https://openalex.org/I99682543"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:repositorium.uminho.pt:1822/79140","is_oa":true,"landing_page_url":"http://doi.org/10.32614/rj-2021-070","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.32614/rj-2021-070","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2021-070","pdf_url":"https://journal.r-project.org/archive/2021/RJ-2021-070/RJ-2021-070.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1643641974","display_name":null,"funder_award_id":"AEI/FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1865708984","display_name":null,"funder_award_id":"AEI/FEDER, UE","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2541803629","display_name":null,"funder_award_id":"PD/BD/142887/2018","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3763834575","display_name":null,"funder_award_id":"MTM2017-82379-R","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4507082872","display_name":null,"funder_award_id":"(AEI/FEDER","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G4531677044","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G4816244515","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4934715579","display_name":null,"funder_award_id":"AEI/FEDER","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5348594205","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7115649624","display_name":null,"funder_award_id":"FEDER, UE","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7420919289","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G769346256","display_name":null,"funder_award_id":"financial support","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3197801096.pdf","grobid_xml":"https://content.openalex.org/works/W3197801096.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W311531870","https://openalex.org/W417799138","https://openalex.org/W1525459925","https://openalex.org/W1593493925","https://openalex.org/W1979300931","https://openalex.org/W1990420052","https://openalex.org/W1997420840","https://openalex.org/W2017028883","https://openalex.org/W2026848882","https://openalex.org/W2044590203","https://openalex.org/W2054269146","https://openalex.org/W2057847137","https://openalex.org/W2088229392","https://openalex.org/W2094924633","https://openalex.org/W2099620796","https://openalex.org/W2108513094","https://openalex.org/W2109747603","https://openalex.org/W2115855678","https://openalex.org/W2135069460","https://openalex.org/W2145997692","https://openalex.org/W2177951670","https://openalex.org/W2313857605","https://openalex.org/W2333207845","https://openalex.org/W2532152462","https://openalex.org/W2582743722","https://openalex.org/W2591487313","https://openalex.org/W3147894994","https://openalex.org/W4250640807","https://openalex.org/W4292027009","https://openalex.org/W4293241248","https://openalex.org/W4392619154","https://openalex.org/W4399584528"],"related_works":["https://openalex.org/W2211820962","https://openalex.org/W3125654303","https://openalex.org/W2367950322","https://openalex.org/W202916971","https://openalex.org/W4289544054","https://openalex.org/W2751934007","https://openalex.org/W1767254696","https://openalex.org/W1503034809","https://openalex.org/W2905292968","https://openalex.org/W86463150"],"abstract_inverted_index":{"Multi-state":[0],"models":[1],"are":[2,88],"a":[3,8,16,28,56,97],"useful":[4],"way":[5],"of":[6,18,36,42,69,105,125,143],"describing":[7,39],"process":[9],"in":[10,21,31,91,96],"which":[11,72],"an":[12,49],"individual":[13],"moves":[14],"through":[15],"number":[17],"finite":[19],"states":[20],"continuous":[22],"time.":[23],"The":[24,123],"illness-death":[25],"model":[26],"plays":[27],"central":[29],"role":[30],"the":[32,40,67,78,110,119,144],"theory":[33],"and":[34,82,99,118],"practice":[35],"these":[37,61,139],"models,":[38,62],"dynamics":[41],"healthy":[43],"subjects":[44],"who":[45],"may":[46],"move":[47],"to":[48,137],"intermediate":[50],"\"diseased\"":[51],"state":[52],"before":[53],"entering":[54],"into":[55],"terminal":[57],"absorbing":[58],"state.":[59],"In":[60],"one":[63],"important":[64],"goal":[65],"is":[66,73,147],"modeling":[68],"transition":[70,111],"rates":[71],"usually":[74],"done":[75],"by":[76,131],"studying":[77],"relationship":[79],"between":[80],"covariates":[81],"disease":[83],"evolution.":[84],"However,":[85],"biomedical":[86],"researchers":[87],"also":[89],"interested":[90],"reporting":[92],"other":[93],"interpretable":[94],"results":[95],"simple":[98],"summarized":[100],"manner.":[101],"These":[102],"include":[103],"estimates":[104],"predictive":[106],"probabilities,":[107,112,114],"such":[108],"as":[109],"occupation":[113],"cumulative":[115],"incidence":[116],"functions,":[117],"sojourn":[120],"time":[121],"distributions.":[122],"development":[124],"survidm":[126],"package":[127],"has":[128],"been":[129],"motivated":[130],"recent":[132],"contribution":[133],"that":[134],"provides":[135],"answers":[136],"all":[138],"topics.":[140],"An":[141],"illustration":[142],"software":[145],"usage":[146],"included":[148],"using":[149],"real":[150],"data.":[151]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
