{"id":"https://openalex.org/W2970937990","doi":"https://doi.org/10.32614/rj-2019-025","title":"Integration of networks and pathways with StarBioTrek package","display_name":"Integration of networks and pathways with StarBioTrek package","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2970937990","doi":"https://doi.org/10.32614/rj-2019-025","mag":"2970937990"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2019-025","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2019-025","pdf_url":"https://journal.r-project.org/archive/2019/RJ-2019-025/RJ-2019-025.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://journal.r-project.org/archive/2019/RJ-2019-025/RJ-2019-025.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040229926","display_name":"Claudia Cava","orcid":"https://orcid.org/0000-0002-5540-4104"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Claudia Cava","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5042706674","display_name":"Isabella Castiglioni","orcid":"https://orcid.org/0000-0001-7191-5417"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isabella Castiglioni","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040229926"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1445,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58159284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"1","first_page":"310","last_page":"310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9125999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6339895725250244},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4362143874168396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32087242603302},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17092424631118774}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6339895725250244},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4362143874168396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32087242603302},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17092424631118774}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.32614/rj-2019-025","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2019-025","pdf_url":"https://journal.r-project.org/archive/2019/RJ-2019-025/RJ-2019-025.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:digitalcommons.unl.edu:r-journal-1235","is_oa":true,"landing_page_url":"https://digitalcommons.unl.edu/r-journal/232","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The R Journal","raw_type":"text"}],"best_oa_location":{"id":"doi:10.32614/rj-2019-025","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2019-025","pdf_url":"https://journal.r-project.org/archive/2019/RJ-2019-025/RJ-2019-025.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2970937990.pdf","grobid_xml":"https://content.openalex.org/works/W2970937990.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W12635786","https://openalex.org/W1849111649","https://openalex.org/W1894182713","https://openalex.org/W2032832904","https://openalex.org/W2096086497","https://openalex.org/W2099787654","https://openalex.org/W2106248311","https://openalex.org/W2113523996","https://openalex.org/W2116443392","https://openalex.org/W2120911337","https://openalex.org/W2130410032","https://openalex.org/W2132619562","https://openalex.org/W2134662941","https://openalex.org/W2140519688","https://openalex.org/W2148590574","https://openalex.org/W2162896254","https://openalex.org/W2167971649","https://openalex.org/W2169144657","https://openalex.org/W2224812643","https://openalex.org/W2235123180","https://openalex.org/W2322148544","https://openalex.org/W2551660834","https://openalex.org/W2566638801","https://openalex.org/W2582671577","https://openalex.org/W2781907489","https://openalex.org/W3100026424","https://openalex.org/W6676942029","https://openalex.org/W6753015565"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W1641042124","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"High-throughput":[0],"genomic":[1],"technologies":[2],"bring":[3],"to":[4,55,71,82,118],"light":[5],"a":[6,13,31,43,106,113,119],"comprehensive":[7],"hallmark":[8],"of":[9,12,30,47,50,80,100,105,109,122],"molecular":[10],"changes":[11],"disease.":[14,44],"It":[15],"is":[16],"increasingly":[17],"evident":[18],"that":[19,97],"genes":[20,51,81],"are":[21,53,68],"not":[22],"isolated":[23],"from":[24],"each":[25,56],"other":[26,57],"and":[27,75,102],"the":[28,38,77,110,123],"identification":[29],"gene":[32,73],"signature":[33],"can":[34],"only":[35],"partially":[36],"elucidate":[37],"de-regulated":[39],"biological":[40,62],"functions":[41],"in":[42],"The":[45],"comprehension":[46],"how":[48],"groups":[49],"(pathways)":[52],"related":[54],"(pathwaycross":[58],"talk)":[59],"could":[60,116],"explain":[61],"mechanisms":[63],"causing":[64],"diseases.":[65],"Biological":[66],"pathways":[67,101],"important":[69],"tools":[70],"identify":[72],"interactions":[74],"decrease":[76],"large":[78],"number":[79],"be":[83],"studied":[84],"by":[85],"partitioning":[86],"them":[87],"into":[88],"smaller":[89],"groups.":[90],"Furthermore,":[91],"recent":[92],"scientific":[93],"studies":[94],"have":[95],"demonstrated":[96],"an":[98],"integration":[99],"networks,":[103],"instead":[104],"single":[107,114],"component":[108],"pathway":[111],"or":[112],"network,":[115],"lead":[117],"deeper":[120],"understanding":[121],"pathology.":[124]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
