{"id":"https://openalex.org/W2610250630","doi":"https://doi.org/10.32614/rj-2017-029","title":"flan: An R Package for Inference on Mutation Models.","display_name":"flan: An R Package for Inference on Mutation Models.","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2610250630","doi":"https://doi.org/10.32614/rj-2017-029","mag":"2610250630"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2017-029","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-029","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-029/RJ-2017-029.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://journal.r-project.org/archive/2017/RJ-2017-029/RJ-2017-029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049402336","display_name":"Adrien Mazoyer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144381","display_name":"Institut de Recherches en Technologies et Sciences pour le Vivant","ror":"https://ror.org/039javj55","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210144381"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adrien Mazoyer","raw_affiliation_strings":["SVH - Statistique pour le Vivant et l\u2019Homme (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SVH - Statistique pour le Vivant et l\u2019Homme (France)","institution_ids":["https://openalex.org/I4210144381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029191264","display_name":"R\u00e9my Drouilhet","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R\u00e9my Drouilhet","raw_affiliation_strings":["FIGAL - Fiabilit\u00e9 et G\u00e9om\u00e9trie Al\u00e9atoire (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FIGAL - Fiabilit\u00e9 et G\u00e9om\u00e9trie Al\u00e9atoire (France)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022960870","display_name":"St\u00e9phane Despr\u00e9aux","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Despr\u00e9aux","raw_affiliation_strings":["LJK  - Laboratoire Jean Kuntzmann (B\u00e2timent IMAG, CS 40700, F-38058 Grenoble Cedex 9  - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LJK  - Laboratoire Jean Kuntzmann (B\u00e2timent IMAG, CS 40700, F-38058 Grenoble Cedex 9  - France)","institution_ids":["https://openalex.org/I4210149092"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044083304","display_name":"Bernard Ycart","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144381","display_name":"Institut de Recherches en Technologies et Sciences pour le Vivant","ror":"https://ror.org/039javj55","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210144381"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bernard Ycart","raw_affiliation_strings":["SVH - Statistique pour le Vivant et l\u2019Homme (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SVH - Statistique pour le Vivant et l\u2019Homme (France)","institution_ids":["https://openalex.org/I4210144381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4207,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.81149256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"334","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9670000076293945,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9613000154495239,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.8798730373382568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6664206981658936},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5746621489524841},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.5051124691963196},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4340358376502991},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43125972151756287},{"id":"https://openalex.org/keywords/statistical-inference","display_name":"Statistical inference","score":0.4208752512931824},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.41263070702552795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37252214550971985},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2932860851287842},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24861598014831543},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20588478446006775},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1963897943496704},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11735939979553223}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.8798730373382568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6664206981658936},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5746621489524841},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.5051124691963196},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4340358376502991},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43125972151756287},{"id":"https://openalex.org/C134261354","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical inference","level":2,"score":0.4208752512931824},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.41263070702552795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37252214550971985},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2932860851287842},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24861598014831543},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20588478446006775},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1963897943496704},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11735939979553223},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.32614/rj-2017-029","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-029","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-029/RJ-2017-029.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-01415996v3","is_oa":true,"landing_page_url":"https://hal.science/hal-01415996","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The R Journal, 2017, 9 (1), pp.334-351. &#x27E8;10.32614/RJ-2017-029&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:digitalcommons.unl.edu:r-journal-1594","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/r-journal/444","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The R Journal","raw_type":"text"}],"best_oa_location":{"id":"doi:10.32614/rj-2017-029","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-029","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-029/RJ-2017-029.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2610250630.pdf","grobid_xml":"https://content.openalex.org/works/W2610250630.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W103093766","https://openalex.org/W585085135","https://openalex.org/W1529432107","https://openalex.org/W1600786531","https://openalex.org/W1824301619","https://openalex.org/W1966001093","https://openalex.org/W1966963129","https://openalex.org/W1970489379","https://openalex.org/W1983644005","https://openalex.org/W2011587186","https://openalex.org/W2013735712","https://openalex.org/W2016942897","https://openalex.org/W2024558473","https://openalex.org/W2055297942","https://openalex.org/W2064078476","https://openalex.org/W2085617239","https://openalex.org/W2105055233","https://openalex.org/W2106201557","https://openalex.org/W2106361386","https://openalex.org/W2107861779","https://openalex.org/W2118829564","https://openalex.org/W2128063877","https://openalex.org/W2135874888","https://openalex.org/W2170343590","https://openalex.org/W2253095891","https://openalex.org/W2272326993","https://openalex.org/W2325672921","https://openalex.org/W2610330922","https://openalex.org/W2905349247","https://openalex.org/W4232794766","https://openalex.org/W4244638572","https://openalex.org/W4251566758","https://openalex.org/W4292930517","https://openalex.org/W4299618397"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W2754214645","https://openalex.org/W4321636575","https://openalex.org/W2357796999","https://openalex.org/W137830373","https://openalex.org/W3000984192","https://openalex.org/W4286952477","https://openalex.org/W4321348134","https://openalex.org/W2103073163","https://openalex.org/W4367858585"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"flan,":[3],"a":[4,71,112],"package":[5,97],"providing":[6],"tools":[7],"for":[8],"fluctuation":[9],"analysis":[10],"of":[11,22,25,41,49,57,115],"mutant":[12,26],"cell":[13],"counts.":[14],"It":[15],"includes":[16],"functions":[17],"dedicated":[18],"to":[19],"the":[20,50,63,74,96],"distribution":[21],"final":[23],"numbers":[24],"cells.":[27],"Parametric":[28],"estimation":[29,92],"and":[30,88,100,111],"hypothesis":[31],"testing":[32],"are":[33,86,98,105,121],"also":[34],"implemented,":[35],"enabling":[36],"inference":[37],"on":[38,117],"different":[39,82],"sorts":[40],"data":[42,75,119],"with":[43],"several":[44],"possible":[45,83],"methods.":[46],"An":[47],"overview":[48],"subject":[51],"is":[52,60,109],"proposed.":[53],"The":[54,90],"general":[55],"form":[56],"mutation":[58],"models":[59,65],"described,":[61,99],"including":[62],"classical":[64],"as":[66],"particular":[67],"cases.":[68],"Estimating":[69],"from":[70],"model,":[72],"when":[73],"have":[76],"been":[77],"generated":[78],"by":[79],"another,":[80],"induces":[81],"biases,":[84],"which":[85],"identified":[87],"discussed.":[89],"three":[91],"methods":[93],"available":[94],"in":[95],"their":[101],"mean":[102],"squared":[103],"errors":[104],"compared.":[106],"Finally,":[107],"implementation":[108],"discussed,":[110],"few":[113],"examples":[114],"usage":[116],"real":[118],"sets":[120],"given.":[122]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
