{"id":"https://openalex.org/W3124980638","doi":"https://doi.org/10.32614/rj-2017-005","title":"alineR: an R Package for Optimizing Feature-Weighted Alignments and Linguistic Distances","display_name":"alineR: an R Package for Optimizing Feature-Weighted Alignments and Linguistic Distances","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W3124980638","doi":"https://doi.org/10.32614/rj-2017-005","mag":"3124980638"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2017-005","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-005","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-005/RJ-2017-005.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://journal.r-project.org/archive/2017/RJ-2017-005/RJ-2017-005.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064483255","display_name":"S. Downey Sean","orcid":null},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]},{"id":"https://openalex.org/I150590629","display_name":"Lane College","ror":"https://ror.org/00e7vgg86","country_code":"US","type":"education","lineage":["https://openalex.org/I150590629"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sean,S. Downey","raw_affiliation_strings":["Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States"],"affiliations":[{"raw_affiliation_string":"Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132","https://openalex.org/I150590629"]},{"raw_affiliation_string":"Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103513968","display_name":"Guowei Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I150590629","display_name":"Lane College","ror":"https://ror.org/00e7vgg86","country_code":"US","type":"education","lineage":["https://openalex.org/I150590629"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guowei Sun","raw_affiliation_strings":["Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States"],"affiliations":[{"raw_affiliation_string":"Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132","https://openalex.org/I150590629"]},{"raw_affiliation_string":"Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012725513","display_name":"Peter K. Norquest","orcid":null},"institutions":[{"id":"https://openalex.org/I150590629","display_name":"Lane College","ror":"https://ror.org/00e7vgg86","country_code":"US","type":"education","lineage":["https://openalex.org/I150590629"]},{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Norquest","raw_affiliation_strings":["Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States"],"affiliations":[{"raw_affiliation_string":"Department of Anthropology, University of Maryland 4302 Chapel Lane, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132","https://openalex.org/I150590629"]},{"raw_affiliation_string":"Department of Anthropology, University of Arizona 1009 E. South Campus Drive, Tucson, AZ 85721 United States","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Department of Mathematics, University of Maryland 176 Campus Drive, College Park, MD 20742 United States","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064483255"],"corresponding_institution_ids":["https://openalex.org/I138006243","https://openalex.org/I150590629","https://openalex.org/I66946132"],"apc_list":null,"apc_paid":null,"fwci":25.1742,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.99337806,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"138","last_page":"138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12090","display_name":"Language and cultural evolution","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/3316","display_name":"Cultural Studies"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12090","display_name":"Language and cultural evolution","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/3316","display_name":"Cultural Studies"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12380","display_name":"Authorship Attribution and Profiling","score":0.9397000074386597,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7760710120201111},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7269073128700256},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5651264786720276},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4445480704307556},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.425982266664505},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4182668626308441},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20131349563598633},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07042622566223145}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7760710120201111},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7269073128700256},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5651264786720276},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4445480704307556},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.425982266664505},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4182668626308441},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20131349563598633},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07042622566223145}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.32614/rj-2017-005","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-005","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-005/RJ-2017-005.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.32614/rj-2017-005","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2017-005","pdf_url":"https://journal.r-project.org/archive/2017/RJ-2017-005/RJ-2017-005.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8299999833106995,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4455943958","display_name":"A multi-scale integrated approach to historical linguistic and demographic reconstruction in Nusa Tenggara, Indonesia","funder_award_id":"1030031","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320312777","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3124980638.pdf","grobid_xml":"https://content.openalex.org/works/W3124980638.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W581221778","https://openalex.org/W781601904","https://openalex.org/W1594498942","https://openalex.org/W1647671624","https://openalex.org/W1749856071","https://openalex.org/W1966408179","https://openalex.org/W1983183450","https://openalex.org/W1986094003","https://openalex.org/W1993582801","https://openalex.org/W2010921946","https://openalex.org/W2015948996","https://openalex.org/W2018140205","https://openalex.org/W2019776606","https://openalex.org/W2026992087","https://openalex.org/W2028704052","https://openalex.org/W2034047918","https://openalex.org/W2037151274","https://openalex.org/W2110679499","https://openalex.org/W2123585855","https://openalex.org/W2128971616","https://openalex.org/W2140015046","https://openalex.org/W2148038915","https://openalex.org/W2149623920","https://openalex.org/W2161776214","https://openalex.org/W2162629891","https://openalex.org/W2170013673","https://openalex.org/W2295744301","https://openalex.org/W2304833867","https://openalex.org/W2793422535","https://openalex.org/W4230059016","https://openalex.org/W4236608768","https://openalex.org/W4249615965","https://openalex.org/W4399587632"],"related_works":["https://openalex.org/W2754214645","https://openalex.org/W3147584709","https://openalex.org/W2977677679","https://openalex.org/W1992327129","https://openalex.org/W4225126530","https://openalex.org/W2381986121","https://openalex.org/W2370918718","https://openalex.org/W4362511788","https://openalex.org/W2256933480","https://openalex.org/W3192589309"],"abstract_inverted_index":{"Linguistic":[0],"distance":[1,132,228],"measurements":[2],"are":[3,17,49,78,92,120],"commonly":[4,45],"used":[5,46],"in":[6,67,99,111],"anthropology":[7],"and":[8,12,27,39,83,94,105,113,147,159,168,187,207,221],"biology":[9],"when":[10,24],"quantitative":[11],"statistical":[13],"comparisons":[14,31],"between":[15],"words":[16],"needed.":[18],"This":[19],"is":[20],"common,":[21],"for":[22,62,73,80,183,188,204],"example,":[23,63],"analyzing":[25],"linguistic":[26,47,68,76,88,131,154,181],"genetic":[28,145],"data.":[29],"Such":[30],"can":[32,200],"provide":[33],"insight":[34],"into":[35],"historical":[36],"population":[37],"patterns":[38,66],"evolutionary":[40,84],"processes.":[41],"However,":[42],"the":[43,87,166,173,179,198,226],"most":[44],"distances":[48,77,89],"derived":[50],"from":[51],"edit":[52],"distances,":[53],"which":[54],"do":[55],"not":[56],"weight":[57],"phonetic":[58],"features":[59],"that":[60,128,142,197,211,222],"may,":[61],"represent":[64],"smaller-scale":[65],"evolution.":[69],"Thus,":[70],"computational":[71],"methods":[72],"calculating":[74],"feature-weighted":[75,130],"needed":[79],"linguistic,":[81],"biological,":[82],"applications;":[85],"additionally,":[86],"presented":[90],"here":[91],"generic":[93],"may":[95],"have":[96],"broader":[97],"applications":[98,110],"fields":[100],"such":[101],"as":[102,107,109],"text":[103],"mining":[104],"search,":[106],"well":[108],"psycholinguistics":[112],"morphology.":[114],"To":[115],"facilitate":[116],"this":[117],"research,":[118],"we":[119,164],"making":[121],"available":[122],"an":[123],"open-source":[124],"R":[125],"software":[126],"package":[127,135,167],"performs":[129],"calculations.":[133],"The":[134],"also":[136],"includes":[137],"a":[138,144,160,189],"supervised":[139,174],"learning":[140,175],"methodology":[141,176,199],"uses":[143],"algorithm":[146],"manually":[148],"determined":[149],"alignments":[150],"to":[151,171],"estimate":[152,201],"13":[153],"parameters":[155,182,203],"including":[156],"feature":[157,213],"weights":[158,214],"skip":[161],"penalty.":[162],"Here":[163],"present":[165],"use":[169],"it":[170],"demonstrate":[172],"by":[177,218],"estimating":[178],"optimal":[180],"both":[184,205],"simulated":[185,206],"data":[186],"sample":[190],"of":[191],"Austronesian":[192],"languages.":[193],"Our":[194],"results":[195],"show":[196],"these":[202],"real":[208],"language":[209],"data,":[210],"optimizing":[212],"improves":[215],"alignment":[216],"accuracy":[217],"approximately":[219],"29%,":[220],"optimization":[223],"significantly":[224],"affects":[225],"resulting":[227],"measurements.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}