{"id":"https://openalex.org/W2789857505","doi":"https://doi.org/10.32614/rj-2015-001","title":"Peptides: A Package for Data Mining of Antimicrobial Peptides","display_name":"Peptides: A Package for Data Mining of Antimicrobial Peptides","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2789857505","doi":"https://doi.org/10.32614/rj-2015-001","mag":"2789857505"},"language":"en","primary_location":{"id":"doi:10.32614/rj-2015-001","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2015-001","pdf_url":"https://journal.r-project.org/archive/2015/RJ-2015-001/RJ-2015-001.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://journal.r-project.org/archive/2015/RJ-2015-001/RJ-2015-001.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053481898","display_name":"Daniel Osorio","orcid":"https://orcid.org/0000-0003-4424-8422"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Daniel Osorio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022224090","display_name":"Paola Rond\u00f3n-Villarreal","orcid":"https://orcid.org/0000-0001-8209-3885"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paola Rond\u00f3n-Villarreal","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100682069","display_name":"Rodrigo Torres","orcid":"https://orcid.org/0000-0003-1113-3020"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rodrigo Torres","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053481898"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.8924,"has_fulltext":true,"cited_by_count":438,"citation_normalized_percentile":{"value":0.93755301,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.6779884696006775},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.6422889232635498},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5660040378570557},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4799259305000305},{"id":"https://openalex.org/keywords/antibacterial-peptide","display_name":"Antibacterial peptide","score":0.4765251874923706},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39912623167037964},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3695274591445923},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3378332257270813},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32019510865211487},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3110799193382263},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09350124001502991},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.08891278505325317},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08853372931480408},{"id":"https://openalex.org/keywords/antibacterial-activity","display_name":"Antibacterial activity","score":0.07120120525360107}],"concepts":[{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.6779884696006775},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.6422889232635498},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5660040378570557},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4799259305000305},{"id":"https://openalex.org/C2993778972","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antibacterial peptide","level":4,"score":0.4765251874923706},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39912623167037964},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3695274591445923},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3378332257270813},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32019510865211487},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3110799193382263},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09350124001502991},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.08891278505325317},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08853372931480408},{"id":"https://openalex.org/C2780104969","wikidata":"https://www.wikidata.org/wiki/Q4774530","display_name":"Antibacterial activity","level":3,"score":0.07120120525360107}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.32614/rj-2015-001","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2015-001","pdf_url":"https://journal.r-project.org/archive/2015/RJ-2015-001/RJ-2015-001.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},{"id":"pmh:oai:digitalcommons.unl.edu:r-journal-1450","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/r-journal/588","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The R Journal","raw_type":"text"}],"best_oa_location":{"id":"doi:10.32614/rj-2015-001","is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2015-001","pdf_url":"https://journal.r-project.org/archive/2015/RJ-2015-001/RJ-2015-001.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The R Journal","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3051669082","display_name":null,"funder_award_id":"Colombia","funder_id":"https://openalex.org/F4320309955","funder_display_name":"Departamento Administrativo de Ciencia, Tecnolog\u00eda e Innovaci\u00f3n (COLCIENCIAS)"}],"funders":[{"id":"https://openalex.org/F4320309955","display_name":"Departamento Administrativo de Ciencia, Tecnolog\u00eda e Innovaci\u00f3n (COLCIENCIAS)","ror":"https://ror.org/048jthh02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2789857505.pdf","grobid_xml":"https://content.openalex.org/works/W2789857505.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1536886974","https://openalex.org/W1863266496","https://openalex.org/W1964557084","https://openalex.org/W1966041739","https://openalex.org/W1971024387","https://openalex.org/W1975058685","https://openalex.org/W1977241485","https://openalex.org/W1978763597","https://openalex.org/W1991321169","https://openalex.org/W1996423252","https://openalex.org/W1996478334","https://openalex.org/W1997868832","https://openalex.org/W2009106357","https://openalex.org/W2043338013","https://openalex.org/W2057021995","https://openalex.org/W2096023347","https://openalex.org/W2097099115","https://openalex.org/W2129115651","https://openalex.org/W2131192673","https://openalex.org/W2132595034","https://openalex.org/W2150934173","https://openalex.org/W2152380569","https://openalex.org/W2160780417","https://openalex.org/W2168812241","https://openalex.org/W2178996695","https://openalex.org/W2471234712","https://openalex.org/W2987883775","https://openalex.org/W4230117582","https://openalex.org/W4232877717","https://openalex.org/W4244736178","https://openalex.org/W6674613434","https://openalex.org/W6682646396"],"related_works":["https://openalex.org/W1973192249","https://openalex.org/W2354039930","https://openalex.org/W4211241221","https://openalex.org/W2044458410","https://openalex.org/W2388831772","https://openalex.org/W3087020980","https://openalex.org/W2511368942","https://openalex.org/W2107525095","https://openalex.org/W3049379709","https://openalex.org/W3001232072"],"abstract_inverted_index":{"Antimicrobial":[0],"peptides":[1],"(AMP)":[2],"are":[3,99],"a":[4,10,33],"promising":[5],"source":[6],"of":[7,19,35,56,61,68,79],"antibiotics":[8],"with":[9,65],"broad":[11],"spectrum":[12],"activity":[13],"against":[14],"bacteria":[15],"and":[16,53,77,89],"low":[17],"incidence":[18],"developing":[20],"resistance.":[21],"The":[22,44],"mechanism":[23],"by":[24],"which":[25],"an":[26],"AMP":[27],"executes":[28],"its":[29],"function":[30],"depends":[31],"on":[32],"set":[34],"computable":[36],"physicochemical":[37],"properties":[38],"from":[39,94],"the":[40,51,62,66,73,85],"amino":[41,81],"acid":[42,82],"sequence.":[43],"Peptides":[45],"package":[46,98],"was":[47],"designed":[48],"to":[49,71,87],"allow":[50],"quick":[52],"easy":[54],"computation":[55],"ten":[57],"structural":[58],"characteristics":[59],"own":[60],"antimicrobial":[63],"peptides,":[64],"aim":[67],"generating":[69],"data":[70],"increase":[72],"accuracy":[74],"in":[75],"classification":[76],"design":[78],"new":[80],"sequences.":[83],"Moreover,":[84],"options":[86],"read":[88],"plot":[90],"XVG":[91],"output":[92],"files":[93],"GROMACS":[95],"molecular":[96],"dynamics":[97],"included.":[100]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":74},{"year":2024,"cited_by_count":88},{"year":2023,"cited_by_count":61},{"year":2022,"cited_by_count":60},{"year":2021,"cited_by_count":67},{"year":2020,"cited_by_count":45},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
