{"id":"https://openalex.org/W4398760662","doi":"https://doi.org/10.3233/shti240396","title":"Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines","display_name":"Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines","publication_year":2024,"publication_date":"2024-08-22","ids":{"openalex":"https://openalex.org/W4398760662","doi":"https://doi.org/10.3233/shti240396","pmid":"https://pubmed.ncbi.nlm.nih.gov/39176725"},"language":"en","primary_location":{"id":"doi:10.3233/shti240396","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti240396","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240396","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240396","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5098805144","display_name":"Thibault Hubert","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thibault Hubert","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098805145","display_name":"Ghislain Vaillant","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ghislain Vaillant","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093787811","display_name":"Olivier Birot","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Birot","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081917603","display_name":"Camila Arias","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Camila Arias","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002976747","display_name":"Antoine Neuraz","orcid":"https://orcid.org/0000-0001-7142-6728"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Antoine Neuraz","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-7142-6728","affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082641159","display_name":"Adrien Coulet","orcid":"https://orcid.org/0000-0002-1466-062X"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Adrien Coulet","raw_affiliation_strings":["Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","Inria, HeKA, PariSant\u00e9 Campus, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-1466-062X","affiliations":[{"raw_affiliation_string":"Centre de Recherche des Cordeliers, Inserm, Universit\u00e9 Paris Cit\u00e9, Sorbonne Universit\u00e9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"raw_affiliation_string":"Inria, HeKA, PariSant\u00e9 Campus, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082641159"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"],"apc_list":null,"apc_paid":null,"fwci":0.8971,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.77425831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"316","issue":null,"first_page":"272","last_page":"276"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8445708155632019},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.730769693851471},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.7242132425308228},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6215261220932007},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5622173547744751},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5500560402870178},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5333309769630432},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5005218982696533},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39981257915496826},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35637032985687256},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.3035864233970642},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1407293975353241}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8445708155632019},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.730769693851471},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.7242132425308228},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6215261220932007},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5622173547744751},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5500560402870178},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5333309769630432},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5005218982696533},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39981257915496826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35637032985687256},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.3035864233970642},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1407293975353241},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti240396","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti240396","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240396","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:39176725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39176725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:HAL:hal-04584688v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-04584688","pdf_url":"https://inria.hal.science/hal-04584688v1/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"MIE 2024 - 34th Medical Informatics Europe Conference, Aug 2024, Athens, Greece","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.3233/shti240396","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti240396","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240396","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4398760662.pdf"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2115871101","https://openalex.org/W2123241698","https://openalex.org/W3048296978","https://openalex.org/W4362603292","https://openalex.org/W4378498632","https://openalex.org/W4382492008","https://openalex.org/W4392020057"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2963217253"],"abstract_inverted_index":{"The":[0],"task":[1],"of":[2,13,25,100,110,121],"Named":[3],"Entity":[4],"Recognition":[5],"(NER)":[6],"is":[7,146],"central":[8],"for":[9,138,158],"leveraging":[10],"the":[11,26,84,101,107,119],"content":[12],"clinical":[14,35,151],"texts":[15,20,36,152],"in":[16,29,77,90],"observational":[17],"studies.":[18],"Indeed,":[19],"contain":[21],"a":[22,60,114,147],"large":[23],"part":[24],"information":[27],"available":[28],"Electronic":[30],"Health":[31],"Records":[32],"(EHRs).":[33],"However,":[34],"are":[37],"highly":[38],"heterogeneous":[39],"between":[40,45],"healthcare":[41],"services":[42],"and":[43,47,72,80,117,135],"institutions,":[44],"countries":[46],"languages,":[48],"making":[49],"it":[50],"hard":[51],"to":[52],"predict":[53],"how":[54],"existing":[55],"tools":[56,145],"may":[57],"perform":[58],"on":[59,68,126],"particular":[61],"corpus.":[62],"We":[63,88],"compared":[64],"four":[65],"NER":[66],"approaches":[67],"three":[69],"French":[70],"corpora":[71],"share":[73],"our":[74,91],"benchmarking":[75],"pipeline":[76],"an":[78],"open":[79],"easy-to-reuse":[81],"manner,":[82],"using":[83],"medkit":[85],"Python":[86],"library.":[87],"include":[89],"pipelines":[92,137],"fine-tuning":[93],"operations":[94],"with":[95],"either":[96],"one":[97],"or":[98],"several":[99],"considered":[102],"corpora.":[103],"Our":[104],"results":[105],"illustrate":[106],"expected":[108],"superiority":[109],"language":[111],"models":[112,123],"over":[113],"dictionary-based":[115],"approach,":[116],"question":[118],"necessity":[120],"refining":[122],"already":[124],"trained":[125],"biomedical":[127],"texts.":[128],"Beyond":[129],"benchmarking,":[130],"we":[131],"believe":[132],"sharing":[133],"reusable":[134],"customizable":[136],"comparing":[139],"fast-evolving":[140],"Natural":[141],"Language":[142],"Processing":[143],"(NLP)":[144],"valuable":[148],"contribution,":[149],"since":[150],"themselves":[153],"can":[154],"hardly":[155],"be":[156],"shared":[157],"privacy":[159],"concerns.":[160]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
