{"id":"https://openalex.org/W4283720564","doi":"https://doi.org/10.3233/shti220722","title":"Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO)","display_name":"Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO)","publication_year":2022,"publication_date":"2022-06-29","ids":{"openalex":"https://openalex.org/W4283720564","doi":"https://doi.org/10.3233/shti220722","pmid":"https://pubmed.ncbi.nlm.nih.gov/35773868"},"language":"en","primary_location":{"id":"doi:10.3233/shti220722","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220722","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220722","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220722","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059450527","display_name":"Nitya Singh","orcid":"https://orcid.org/0000-0003-1090-3046"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nitya Singh","raw_affiliation_strings":["Emerging Pathogens Institute, Food Systems Institute, Animal Sciences Department, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emerging Pathogens Institute, Food Systems Institute, Animal Sciences Department, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028953597","display_name":"Naomi Braun","orcid":null},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naomi Braun","raw_affiliation_strings":["Department of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076610873","display_name":"William R. Hogan","orcid":"https://orcid.org/0000-0002-9881-1017"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Hogan","raw_affiliation_strings":["Department of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047229883","display_name":"Mathias Brochhausen","orcid":"https://orcid.org/0000-0003-1834-3856"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathias Brochhausen","raw_affiliation_strings":["Dept. of Biomedical Informatics, University of Arkansas for Medical Sciences, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Informatics, University of Arkansas for Medical Sciences, USA","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13110911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"295","issue":null,"first_page":"302","last_page":"303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.954800009727478,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.9759685397148132},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.7060877084732056},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6922526359558105},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5412622690200806},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5037876963615417},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.47610318660736084},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20510369539260864},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1897762417793274},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18727907538414001},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1689680814743042},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09538456797599792}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.9759685397148132},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.7060877084732056},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6922526359558105},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5412622690200806},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5037876963615417},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.47610318660736084},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20510369539260864},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1897762417793274},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18727907538414001},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1689680814743042},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09538456797599792},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013048","descriptor_name":"Specimen Handling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013048","descriptor_name":"Specimen Handling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013048","descriptor_name":"Specimen Handling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti220722","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220722","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220722","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35773868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35773868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti220722","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220722","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220722","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283720564.pdf","grobid_xml":"https://content.openalex.org/works/W4283720564.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1628054318","https://openalex.org/W2102175381","https://openalex.org/W2113142309","https://openalex.org/W2346890176","https://openalex.org/W2657797703","https://openalex.org/W6704465526"],"related_works":["https://openalex.org/W2987829932","https://openalex.org/W4376104255","https://openalex.org/W4283720564","https://openalex.org/W2551101717","https://openalex.org/W4220802864","https://openalex.org/W2110249454","https://openalex.org/W2770446264","https://openalex.org/W2749703357","https://openalex.org/W3195606140","https://openalex.org/W2738778860"],"abstract_inverted_index":{"Integration":[0],"of":[1,4,18,20,49],"clinical-pathological":[2],"information":[3,25],"Biobanks":[5],"with":[6,63],"genomics-epidemiological":[7],"data/inferences":[8],"in":[9,59],"a":[10,42],"structured":[11],"and":[12,24,56],"consistent":[13],"manner,":[14],"mitigating":[15],"inherent":[16],"heterogeneities":[17],"sites/sources":[19],"data/sample":[21],"collection,":[22],"processing,":[23],"storage":[26],"hurdles,":[27],"is":[28],"primary":[29],"to":[30,75,80],"achieving":[31],"an":[32,68],"automated":[33],"surveillance":[34],"system.":[35],"Genomics":[36],"Integrated":[37],"Biobanking":[38],"Ontology":[39],"(GIBO)":[40],"presents":[41],"solution":[43],"for":[44],"preserving":[45],"the":[46,64],"contextual":[47],"meaning":[48],"heterogeneous":[50],"data,":[51],"while":[52],"interlinking":[53],"different":[54],"genomics":[55,77],"epidemiological":[57],"concepts":[58],"machine":[60],"comprehensible":[61],"format":[62],"biobank":[65],"framework.":[66],"GIBO":[67],"OWL":[69],"ontology":[70],"introduces":[71],"84":[72],"new":[73],"classes":[74],"integrate":[76],"data":[78],"relevant":[79],"public":[81],"health.":[82]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
