{"id":"https://openalex.org/W4283716501","doi":"https://doi.org/10.3233/shti220719","title":"Explaining Contextualized Word Embeddings in Biomedical Research \u2013 A Qualitative Investigation","display_name":"Explaining Contextualized Word Embeddings in Biomedical Research \u2013 A Qualitative Investigation","publication_year":2022,"publication_date":"2022-06-29","ids":{"openalex":"https://openalex.org/W4283716501","doi":"https://doi.org/10.3233/shti220719","pmid":"https://pubmed.ncbi.nlm.nih.gov/35773865"},"language":"en","primary_location":{"id":"doi:10.3233/shti220719","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220719","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220719","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220719","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086979438","display_name":"Marko Miletic","orcid":null},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marko Miletic","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102842494","display_name":"Murat Sariyar","orcid":"https://orcid.org/0000-0003-3432-2860"},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Murat Sariyar","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5102842494"],"corresponding_institution_ids":["https://openalex.org/I130692619"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13185913,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"295","issue":null,"first_page":"289","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.957099974155426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6644032001495361},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6557188630104065},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.649957537651062},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5929297208786011},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5116915702819824},{"id":"https://openalex.org/keywords/sign","display_name":"Sign (mathematics)","score":0.44753220677375793},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.39448317885398865},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1860555112361908},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.08723136782646179},{"id":"https://openalex.org/keywords/social-science","display_name":"Social science","score":0.07407104969024658},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.05056998133659363}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6644032001495361},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6557188630104065},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.649957537651062},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5929297208786011},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5116915702819824},{"id":"https://openalex.org/C139676723","wikidata":"https://www.wikidata.org/wiki/Q1193832","display_name":"Sign (mathematics)","level":2,"score":0.44753220677375793},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.39448317885398865},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1860555112361908},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.08723136782646179},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.07407104969024658},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.05056998133659363},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti220719","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220719","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220719","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35773865","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35773865","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:arbor.bfh.ch:18476","is_oa":true,"landing_page_url":"https://arbor.bfh.ch/18476/","pdf_url":null,"source":{"id":"https://openalex.org/S4406922806","display_name":"ARBOR - Bern University of Applied Sciences Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Miletic, Marko; Sariyar, Murat (2022). Explaining Contextualized Word Embeddings in Biomedical Research \u2013 A Qualitative Investigation Studies in Health Technology and Informatics, 295, pp. 289-292. IOS Press 10.3233/SHTI220719 &lt;http://dx.doi.org/10.3233/SHTI220719&gt;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3233/shti220719","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220719","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220719","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283716501.pdf","grobid_xml":"https://content.openalex.org/works/W4283716501.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W41683454","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2927351257","https://openalex.org/W2982424689","https://openalex.org/W3102363003","https://openalex.org/W3144041472","https://openalex.org/W3158665049","https://openalex.org/W3179134982","https://openalex.org/W4225914735"],"related_works":["https://openalex.org/W2360025963","https://openalex.org/W2063185616","https://openalex.org/W2360785147","https://openalex.org/W2789919619","https://openalex.org/W2516800609","https://openalex.org/W2293457016","https://openalex.org/W2356313285","https://openalex.org/W2353329674","https://openalex.org/W2090485996","https://openalex.org/W2794115703"],"abstract_inverted_index":{"Contextualized":[0],"word":[1,47,101],"embeddings":[2],"proved":[3],"to":[4,14,59,80,94],"be":[5,38,66],"highly":[6],"successful":[7],"quantitative":[8,69,73],"representations":[9],"of":[10,56,87,97,116],"words":[11],"that":[12,52,83],"allow":[13],"efficiently":[15],"solve":[16],"various":[17],"tasks":[18],"such":[19],"as":[20,40,70,72,89],"clinical":[21],"entity":[22],"normalization":[23],"in":[24],"unstructured":[25],"texts.":[26],"In":[27],"this":[28],"paper,":[29],"we":[30],"investigate":[31],"how":[32],"the":[33,53,81,84,95,104,113],"Saussurean":[34],"sign":[35],"theory":[36],"can":[37,65],"used":[39],"a":[41],"qualitative":[42],"explainable":[43],"AI":[44],"method":[45],"for":[46],"embeddings.":[48,102],"Our":[49],"assumption":[50],"is":[51,58,78],"main":[54],"goal":[55],"XAI":[57],"produce":[60],"confidence":[61],"and/or":[62],"trust,":[63],"which":[64],"gained":[67],"through":[68],"well":[71],"approaches.":[74],"One":[75],"important":[76],"result":[77],"related":[79],"fact":[82],"differential":[85],"structure":[86],"language":[88],"explained":[90],"by":[91],"Saussure":[92],"corresponds":[93],"possibility":[96],"adding":[98],"and":[99],"subtracting":[100],"On":[103],"other":[105],"hand,":[106],"these":[107],"mathematical":[108],"structures":[109],"provide":[110],"insights":[111],"into":[112],"inner":[114],"workings":[115],"natural":[117],"language.":[118]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
