{"id":"https://openalex.org/W4401364934","doi":"https://doi.org/10.3233/sw-243568","title":"DeepOnto: A Python package for ontology engineering with deep learning","display_name":"DeepOnto: A Python package for ontology engineering with deep learning","publication_year":2024,"publication_date":"2024-08-06","ids":{"openalex":"https://openalex.org/W4401364934","doi":"https://doi.org/10.3233/sw-243568"},"language":"en","primary_location":{"id":"doi:10.3233/sw-243568","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-243568","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw243568?id=semantic-web%2Fsw243568","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"software-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://content.iospress.com:443/download/semantic-web/sw243568?id=semantic-web%2Fsw243568","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100461968","display_name":"Yuan He","orcid":"https://orcid.org/0000-0002-4486-1262"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Yuan He","raw_affiliation_strings":["Department of Computer Science, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085691361","display_name":"Jiaoyan Chen","orcid":"https://orcid.org/0000-0003-4643-6750"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jiaoyan Chen","raw_affiliation_strings":["Department of Computer Science, The University of Manchester,UK","Department of Computer Science, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Manchester,UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Department of Computer Science, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035163413","display_name":"Hang Dong","orcid":"https://orcid.org/0000-0001-6828-6891"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hang Dong","raw_affiliation_strings":["Department of Computer Science, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060350556","display_name":"Ian Horrocks","orcid":"https://orcid.org/0000-0002-2685-7462"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Horrocks","raw_affiliation_strings":["Department of Computer Science, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014243535","display_name":"Carlo Allocca","orcid":"https://orcid.org/0000-0002-7305-3790"},"institutions":[{"id":"https://openalex.org/I4210117523","display_name":"Samsung (United Kingdom)","ror":"https://ror.org/01w6gjq94","country_code":"GB","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210117523"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carlo Allocca","raw_affiliation_strings":["Samsung Research, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samsung Research, UK","institution_ids":["https://openalex.org/I4210117523"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100387013","display_name":"Taehun Kim","orcid":"https://orcid.org/0000-0001-9322-9741"},"institutions":[{"id":"https://openalex.org/I4210117523","display_name":"Samsung (United Kingdom)","ror":"https://ror.org/01w6gjq94","country_code":"GB","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210117523"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Taehun Kim","raw_affiliation_strings":["Samsung Research, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samsung Research, UK","institution_ids":["https://openalex.org/I4210117523"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083507251","display_name":"Brahmananda Sapkota","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117523","display_name":"Samsung (United Kingdom)","ror":"https://ror.org/01w6gjq94","country_code":"GB","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210117523"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Brahmananda Sapkota","raw_affiliation_strings":["Samsung Research, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samsung Research, UK","institution_ids":["https://openalex.org/I4210117523"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100461968"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"15","issue":"5","first_page":"1991","last_page":"2004"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8182666301727295},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6802769899368286},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5715328454971313},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5682216286659241},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5445471405982971},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4853750467300415},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4718218743801117},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2969765365123749}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8182666301727295},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6802769899368286},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5715328454971313},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5682216286659241},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5445471405982971},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4853750467300415},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4718218743801117},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2969765365123749},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/sw-243568","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-243568","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw243568?id=semantic-web%2Fsw243568","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmh:oai:ore.exeter.ac.uk:10871/135563","is_oa":true,"landing_page_url":"http://hdl.handle.net/10871/135563","pdf_url":null,"source":{"id":"https://openalex.org/S4306401998","display_name":"Open Research Exeter (University of Exeter)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I23923803","host_organization_name":"University of Exeter","host_organization_lineage":["https://openalex.org/I23923803"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.3233/sw-243568","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-243568","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw243568?id=semantic-web%2Fsw243568","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5799999833106995,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3253514882","display_name":"ConCur: Knowledge Base Construction and Curation","funder_award_id":"EP/V050869/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5652537686","display_name":"UK FIRES: Locating Resource Efficiency at the heart of Future Industrial Strategy in the UK","funder_award_id":"EP/S019111/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G667038190","display_name":"OASIS: Ontology Reasoning over Frequently-changing and Streaming Data","funder_award_id":"EP/S032347/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7097328358","display_name":null,"funder_award_id":"EP/S019111/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7351134993","display_name":null,"funder_award_id":"EP/S032347/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7513764588","display_name":null,"funder_award_id":"EP/V050869/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320022","display_name":"Sight Research UK","ror":"https://ror.org/03z2py885"},{"id":"https://openalex.org/F4320332195","display_name":"Samsung","ror":"https://ror.org/04w3jy968"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401364934.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W217162355","https://openalex.org/W1601038846","https://openalex.org/W1938484623","https://openalex.org/W2087779040","https://openalex.org/W2101491706","https://openalex.org/W2118100588","https://openalex.org/W2148014577","https://openalex.org/W2159092541","https://openalex.org/W2159583324","https://openalex.org/W2168120333","https://openalex.org/W2261812172","https://openalex.org/W2404369708","https://openalex.org/W2517617279","https://openalex.org/W2557074642","https://openalex.org/W2749087070","https://openalex.org/W2770093575","https://openalex.org/W2910124299","https://openalex.org/W2911489562","https://openalex.org/W2970476646","https://openalex.org/W2980532801","https://openalex.org/W3166265964","https://openalex.org/W4280604898","https://openalex.org/W4283819412","https://openalex.org/W4311940841","https://openalex.org/W4383533118","https://openalex.org/W6634924070","https://openalex.org/W6713634263"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W4231704780","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W4287027380"],"abstract_inverted_index":{"Integrating":[0],"deep":[1,61,72,99,170],"learning":[2,73,171],"techniques,":[3],"particularly":[4],"language":[5],"models":[6],"(LMs),":[7],"with":[8,98],"knowledge":[9],"representation":[10],"techniques":[11],"like":[12,75],"ontologies":[13,55],"has":[14],"raised":[15],"widespread":[16],"attention,":[17],"urging":[18],"the":[19,46,86,111,182,190,199,203],"need":[20],"of":[21,52,151,185,202],"a":[22,91,104,122,149],"platform":[23],"that":[24,156],"supports":[25],"both":[26],"paradigms.":[27],"Although":[28],"packages":[29],"such":[30,162],"as":[31,163],"OWL":[32,115],"API":[33],"and":[34,77,113,126,141,154,166,198],"Jena":[35],"offer":[36],"robust":[37],"support":[38,157],"for":[39,59,81,95],"basic":[40],"ontology":[41,66,96,106,159,164],"processing":[42,107],"features,":[43],"they":[44],"lack":[45],"capability":[47],"to":[48,130],"transform":[49],"various":[50,158],"types":[51],"information":[53],"within":[54],"into":[56],"formats":[57],"suitable":[58],"downstream":[60],"learning-based":[62],"applications.":[63],"Moreover,":[64],"widely-used":[65],"APIs":[67],"are":[68,79],"primarily":[69,173],"Java-based":[70],"while":[71],"frameworks":[74],"PyTorch":[76],"Tensorflow":[78],"mainly":[80],"Python":[82,92],"programming.":[83],"To":[84],"address":[85],"needs,":[87],"we":[88,179],"present":[89],"DeepOnto,":[90],"package":[93,102],"designed":[94],"engineering":[97,160],"learning.":[100],"The":[101],"encompasses":[103],"core":[105],"module":[108],"founded":[109],"on":[110,144],"widely-recognised":[112],"reliable":[114],"API,":[116],"encapsulating":[117],"its":[118,128],"fundamental":[119],"features":[120],"in":[121,194],"more":[123],"\u201cPythonic\u201d":[124],"manner":[125],"extending":[127],"capabilities":[129],"incorporate":[131],"other":[132],"essential":[133],"components":[134],"including":[135],"reasoning,":[136],"verbalisation,":[137],"normalisation,":[138],"taxonomy,":[139],"projection,":[140],"more.":[142],"Building":[143],"this":[145,177],"module,":[146],"DeepOnto":[147,186],"offers":[148],"suite":[150],"tools,":[152],"resources,":[153],"algorithms":[155],"tasks,":[161],"alignment":[165],"completion,":[167],"by":[168],"harnessing":[169],"methods,":[172],"pre-trained":[174],"LMs.":[175],"In":[176],"paper,":[178],"also":[180],"demonstrate":[181],"practical":[183],"utility":[184],"through":[187],"two":[188],"use-cases:":[189],"Digital":[191],"Health":[192],"Coaching":[193],"Samsung":[195],"Research":[196],"UK":[197],"Bio-ML":[200],"track":[201],"Ontology":[204],"Alignment":[205],"Evaluation":[206],"Initiative":[207],"(OAEI).":[208]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
