{"id":"https://openalex.org/W1537617436","doi":"https://doi.org/10.3233/sw-2012-0086","title":"BioPortal as a dataset of linked biomedical ontologies and terminologies in RDF","display_name":"BioPortal as a dataset of linked biomedical ontologies and terminologies in RDF","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1537617436","doi":"https://doi.org/10.3233/sw-2012-0086","mag":"1537617436","pmid":"https://pubmed.ncbi.nlm.nih.gov/25214827"},"language":"en","primary_location":{"id":"doi:10.3233/sw-2012-0086","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-2012-0086","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056211653","display_name":"Manuel Salvadores","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Manuel Salvadores","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018267576","display_name":"Paul R. Alexander","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul R. Alexander","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111383811","display_name":"Natalya F. Noy","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalya F. Noy","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA. E-mail: {manuelso,palexander,musen,noy}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056211653"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":3.5934,"has_fulltext":false,"cited_by_count":126,"citation_normalized_percentile":{"value":0.93294045,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"4","issue":"3","first_page":"277","last_page":"284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9193000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8083184957504272},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8014715909957886},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.800439715385437},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.7948853373527527},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7894973754882812},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.7509205341339111},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.7356348037719727},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.651584804058075},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6385676860809326},{"id":"https://openalex.org/keywords/idef5","display_name":"IDEF5","score":0.5711151957511902},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.5657730102539062},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4576945900917053},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4413367509841919},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.3532854914665222},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.31518858671188354},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.14836743474006653}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8083184957504272},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8014715909957886},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.800439715385437},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.7948853373527527},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7894973754882812},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.7509205341339111},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.7356348037719727},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.651584804058075},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6385676860809326},{"id":"https://openalex.org/C118248724","wikidata":"https://www.wikidata.org/wiki/Q5969997","display_name":"IDEF5","level":4,"score":0.5711151957511902},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.5657730102539062},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4576945900917053},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4413367509841919},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.3532854914665222},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.31518858671188354},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.14836743474006653},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3233/sw-2012-0086","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-2012-0086","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmid:25214827","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25214827","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic web","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4159173","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4159173","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4159173","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semant Web","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4159173","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W69498482","https://openalex.org/W91108659","https://openalex.org/W181857603","https://openalex.org/W1601038846","https://openalex.org/W1809130274","https://openalex.org/W1975062706","https://openalex.org/W2102348207","https://openalex.org/W2116231264","https://openalex.org/W2131660156","https://openalex.org/W2168528736","https://openalex.org/W2232592031","https://openalex.org/W2604748391","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2942194862","https://openalex.org/W1801798365","https://openalex.org/W4290780032","https://openalex.org/W991275336","https://openalex.org/W1494571806","https://openalex.org/W2399216429","https://openalex.org/W1508812357","https://openalex.org/W1537617436","https://openalex.org/W2401209741","https://openalex.org/W184366147"],"abstract_inverted_index":{"BioPortal":[0],"is":[1],"a":[2,33],"repository":[3],"of":[4,36,44,58,103,124],"biomedical":[5],"ontologies-the":[6],"largest":[7],"such":[8,106],"repository,":[9],"with":[10,97,134],"more":[11],"than":[12],"300":[13,76],"ontologies":[14,20,61],"to":[15,93,100],"date.":[16],"This":[17,64],"set":[18],"includes":[19],"that":[21,39,82],"were":[22],"developed":[23],"in":[24,47,91],"OWL,":[25],"OBO":[26],"and":[27,72,87,114,130],"other":[28],"formats,":[29],"as":[30,32,107],"well":[31],"large":[34],"number":[35],"medical":[37],"terminologies":[38],"the":[40,55,75,80,83,104,111],"US":[41],"National":[42],"Library":[43],"Medicine":[45],"distributes":[46],"its":[48],"own":[49,136],"proprietary":[50],"format.":[51],"We":[52,78],"have":[53],"published":[54],"RDF":[56],"version":[57],"all":[59],"these":[60],"at":[62],"http://sparql.bioontology.org.":[63],"dataset":[65,95,118],"contains":[66,120],"190M":[67],"triples,":[68],"representing":[69],"both":[70,128],"metadata":[71,81],"content":[73],"for":[74,110],"ontologies.":[77],"use":[79],"ontology":[84],"authors":[85],"provide":[86,94],"simple":[88],"RDFS":[89],"reasoning":[90],"order":[92],"users":[96],"uniform":[98],"access":[99],"key":[101],"properties":[102,109],"ontologies,":[105],"lexical":[108],"class":[112],"names":[113],"provenance":[115],"data.":[116],"The":[117],"also":[119],"9.8M":[121],"cross-ontology":[122],"mappings":[123],"different":[125],"types,":[126],"generated":[127],"manually":[129],"automatically,":[131],"which":[132],"come":[133],"their":[135],"metadata.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
