{"id":"https://openalex.org/W1659163511","doi":"https://doi.org/10.3233/sw-2012-0057","title":"WebProt\u00e9g\u00e9: A collaborative ontology editor and knowledge acquisition tool for the Web","display_name":"WebProt\u00e9g\u00e9: A collaborative ontology editor and knowledge acquisition tool for the Web","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1659163511","doi":"https://doi.org/10.3233/sw-2012-0057","mag":"1659163511","pmid":"https://pubmed.ncbi.nlm.nih.gov/23807872"},"language":"en","primary_location":{"id":"doi:10.3233/sw-2012-0057","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-2012-0057","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051690097","display_name":"Tania Tudorache","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tania Tudorache","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009786707","display_name":"Csongor Nyulas","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Csongor Nyulas","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111383811","display_name":"Natalya F. Noy","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalya F. Noy","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA. E-mail: {tudorache,nyulas,noy,musen}@stanford.edu#TAB#","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051690097"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":46.2833,"has_fulltext":false,"cited_by_count":194,"citation_normalized_percentile":{"value":0.99846691,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"89","last_page":"99"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9510999917984009,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.764630138874054},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.7528451681137085},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6542538404464722},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5366242527961731},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.47007375955581665},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4115482568740845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.764630138874054},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.7528451681137085},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6542538404464722},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5366242527961731},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.47007375955581665},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4115482568740845},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/sw-2012-0057","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-2012-0057","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmid:23807872","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23807872","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic web","raw_type":null},{"id":"pmh:oai:europepmc.org:2685947","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3691821","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6100000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W16205644","https://openalex.org/W78717232","https://openalex.org/W1510997181","https://openalex.org/W1517165089","https://openalex.org/W1573053987","https://openalex.org/W1577703384","https://openalex.org/W1579876403","https://openalex.org/W1600120165","https://openalex.org/W1601038846","https://openalex.org/W1789760222","https://openalex.org/W1807996340","https://openalex.org/W2023650211","https://openalex.org/W2042772350","https://openalex.org/W2049684331","https://openalex.org/W2091729411","https://openalex.org/W2125845915","https://openalex.org/W2127480960","https://openalex.org/W2131660156","https://openalex.org/W2164888391","https://openalex.org/W2164947858","https://openalex.org/W2185348002","https://openalex.org/W2912580958"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W2333894209","https://openalex.org/W2031517545","https://openalex.org/W1649706580","https://openalex.org/W2112742959","https://openalex.org/W1512154377","https://openalex.org/W2182204580","https://openalex.org/W3195608031"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,38],"present":[4,181],"WebProt\u00e9g\u00e9-a":[5],"lightweight":[6],"ontology":[7,75,87],"editor":[8],"and":[9,24,30,53,62,105,109,154,165,187,190,203],"knowledge":[10],"acquisition":[11],"tool":[12,92],"for":[13,46,65,103,135,159,177,197],"the":[14,17,25,35,47,74,83,142,150,155,160,182],"Web.":[15],"With":[16],"wide":[18],"adoption":[19,27],"of":[20,28,50,73,120,185,194],"Web":[21,32,98,157],"2.0":[22],"platforms":[23],"gradual":[26],"ontologies":[29],"Semantic":[31],"technologies":[33],"in":[34,174],"real":[36],"world,":[37],"need":[39],"ontology-development":[40],"tools":[41],"that":[42,93,113],"are":[43],"better":[44],"suited":[45],"novel":[48],"ways":[49],"interacting,":[51],"constructing":[52],"consuming":[54],"knowledge.":[55],"Users":[56],"today":[57],"take":[58],"Web-based":[59],"content":[60],"creation":[61],"online":[63,207],"collaboration":[64,148],"granted.":[66],"WebProt\u00e9g\u00e9":[67,140,173,186,200],"integrates":[68],"these":[69],"features":[70,184],"as":[71],"part":[72],"development":[76,88],"process":[77],"itself.":[78],"We":[79,138,180],"tried":[80],"to":[81,86,117,129,170],"lower":[82],"entry":[84],"barrier":[85],"by":[89],"providing":[90],"a":[91,106],"is":[94,201,209],"accessible":[95],"from":[96],"any":[97,118],"browser,":[99],"has":[100],"extensive":[101],"support":[102],"collaboration,":[104],"highly":[107],"customizable":[108],"pluggable":[110],"user":[111,121,125],"interface":[112,126],"can":[114],"be":[115],"adapted":[116],"level":[119],"expertise.":[122],"The":[123,163],"declarative":[124],"enabled":[127],"us":[128,169],"create":[130],"custom":[131],"knowledge-acquisition":[132],"forms":[133],"tailored":[134],"domain":[136],"experts.":[137],"built":[139],"using":[141],"existing":[143],"Prot\u00e9g\u00e9":[144],"infrastructure,":[145],"which":[146],"supports":[147],"on":[149],"back":[151],"end":[152],"side,":[153],"Google":[156],"Toolkit":[158],"front":[161],"end.":[162],"generic":[164],"extensible":[166],"infrastructure":[167],"allowed":[168],"easily":[171],"deploy":[172],"production":[175],"settings":[176],"several":[178],"projects.":[179,199],"main":[183],"its":[188,195],"architecture":[189],"describe":[191],"briefly":[192],"some":[193],"uses":[196],"real-world":[198],"free":[202],"open":[204],"source.":[205],"An":[206],"demo":[208],"available":[210],"at":[211],"http://webprotege.stanford.edu.":[212]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":26},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
