{"id":"https://openalex.org/W2947345904","doi":"https://doi.org/10.3233/sw-190357","title":"A systematic survey of temporal requirements of bio-health ontologies","display_name":"A systematic survey of temporal requirements of bio-health ontologies","publication_year":2019,"publication_date":"2019-05-31","ids":{"openalex":"https://openalex.org/W2947345904","doi":"https://doi.org/10.3233/sw-190357","mag":"2947345904"},"language":"en","primary_location":{"id":"doi:10.3233/sw-190357","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-190357","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw190357?id=semantic-web%2Fsw190357","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://content.iospress.com:443/download/semantic-web/sw190357?id=semantic-web%2Fsw190357","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007379458","display_name":"Jared Leo","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jared Leo","raw_affiliation_strings":["Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk"],"affiliations":[{"raw_affiliation_string":"Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":"https://orcid.org/0000-0002-7356-1779"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk"],"affiliations":[{"raw_affiliation_string":"Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072391425","display_name":"Ulrike Sattler","orcid":"https://orcid.org/0000-0003-4103-3389"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Uli Sattler","raw_affiliation_strings":["Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk"],"affiliations":[{"raw_affiliation_string":"Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005432645","display_name":"Bijan Parsia","orcid":"https://orcid.org/0000-0002-3222-7571"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bijan Parsia","raw_affiliation_strings":["Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk"],"affiliations":[{"raw_affiliation_string":"Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mails:\u00a0jared.leo@manchester.ac.uk,\u00a0nicolas.matentzoglu@gmail.com,\u00a0uli.sattler@manchester.ac.uk,\u00a0bijan.parsia@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007379458"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.0852,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.4576734,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"4","first_page":"657","last_page":"688"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9276000261306763,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7203058004379272},{"id":"https://openalex.org/keywords/ontology-language","display_name":"Ontology language","score":0.669222354888916},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.650661289691925},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.6186562180519104},{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.5786237120628357},{"id":"https://openalex.org/keywords/description-logic","display_name":"Description logic","score":0.5019607543945312},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4926517605781555},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4868425726890564},{"id":"https://openalex.org/keywords/temporal-database","display_name":"Temporal database","score":0.46924543380737305},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.43658921122550964},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3714919686317444},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3611515462398529},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3512517511844635},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3429569900035858},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.2967066168785095},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2409871518611908},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23709967732429504},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.09883508086204529}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7203058004379272},{"id":"https://openalex.org/C61673122","wikidata":"https://www.wikidata.org/wiki/Q7095059","display_name":"Ontology language","level":3,"score":0.669222354888916},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.650661289691925},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.6186562180519104},{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.5786237120628357},{"id":"https://openalex.org/C102993220","wikidata":"https://www.wikidata.org/wiki/Q387196","display_name":"Description logic","level":2,"score":0.5019607543945312},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4926517605781555},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4868425726890564},{"id":"https://openalex.org/C77277458","wikidata":"https://www.wikidata.org/wiki/Q1969246","display_name":"Temporal database","level":2,"score":0.46924543380737305},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.43658921122550964},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3714919686317444},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3611515462398529},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3512517511844635},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3429569900035858},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.2967066168785095},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2409871518611908},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23709967732429504},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.09883508086204529},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/sw-190357","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-190357","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw190357?id=semantic-web%2Fsw190357","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/b76ff6dc-9217-46f6-890d-a4c10f070e98","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/b76ff6dc-9217-46f6-890d-a4c10f070e98","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Leo, J, Matentzoglu, N, Sattler, U & Parsia, B 2020, 'A systematic survey of temporal requirements of bio-health ontologies', Semantic Web, pp. 657-688. https://doi.org/10.3233/SW-190357","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/b76ff6dc-9217-46f6-890d-a4c10f070e98","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/a-systematic-survey-of-temporal-requirements-of-biohealth-ontologies(b76ff6dc-9217-46f6-890d-a4c10f070e98).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.3233/sw-190357","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-190357","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw190357?id=semantic-web%2Fsw190357","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2947345904.pdf","grobid_xml":"https://content.openalex.org/works/W2947345904.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W62327733","https://openalex.org/W1501546233","https://openalex.org/W1585071008","https://openalex.org/W1678959094","https://openalex.org/W1860690667","https://openalex.org/W2068309352","https://openalex.org/W2087779040","https://openalex.org/W2103260426","https://openalex.org/W2113142309","https://openalex.org/W2115806597","https://openalex.org/W2139315672","https://openalex.org/W2142614470","https://openalex.org/W2150617113","https://openalex.org/W2161484642","https://openalex.org/W2396513609","https://openalex.org/W4285719527","https://openalex.org/W4300129298","https://openalex.org/W6630000427","https://openalex.org/W6634111623","https://openalex.org/W6634855613"],"related_works":["https://openalex.org/W3099272318","https://openalex.org/W3086952825","https://openalex.org/W2399049340","https://openalex.org/W2398931073","https://openalex.org/W17926982","https://openalex.org/W2129802967","https://openalex.org/W2483423859","https://openalex.org/W2790232768","https://openalex.org/W2402265113","https://openalex.org/W32608275"],"abstract_inverted_index":{"The":[0],"Description":[1],"Logic":[2],"SROIQ(D),":[3],"as":[4,145],"the":[5,9,25,74,98,121,167],"logical":[6,154],"core":[7],"of":[8,54,61,67,83,97,109,123,130,140,148,170],"W3C":[10],"standard":[11],"Web":[12],"Ontology":[13],"Language":[14],"(OWL":[15],"2),":[16],"is":[17],"a":[18,38,45,102,127,137,146,151],"widely":[19],"used":[20],"formalism":[21],"for":[22,89,112],"ontologies":[23,111],"in":[24,163],"life":[26,33],"sciences.":[27],"Bio-health":[28],"applications":[29],"including":[30],"health-care":[31],"and":[32,116],"science":[34],"domains":[35],"commonly":[36],"have":[37],"need":[39,160],"to":[40,119,156,161,165],"represent":[41],"temporal":[42,55,84,114,168],"information":[43],"such":[44],"s":[46],"medication":[47],"frequency":[48],"or":[49,65,153],"stage-based":[50],"development.":[51],"Different":[52],"classes":[53],"phenomena":[56],"may":[57],"generate":[58],"different":[59],"sorts":[60],"requirements":[62,85,169],"on":[63,118],"SROIQ(D)":[64],"extensions":[66],"SROIQ(D).":[68],"In":[69],"this":[70],"paper,":[71],"we":[72,135],"deliver":[73],"first":[75],"precise":[76],"investigation":[77,96],"into":[78],"identifying":[79],"exactly":[80],"what":[81],"kinds":[82],"are":[86],"most":[87],"important":[88],"bio-health":[90,171],"ontologies.":[91,172],"We":[92],"conduct":[93],"an":[94],"empirical":[95],"OBO":[99],"Foundry":[100],"using":[101,126],"bespoke":[103],"methodological":[104],"approach":[105],"by":[106],"searching":[107],"each":[108],"its":[110],"specific":[113],"features":[115,125],"go":[117],"calculate":[120],"importance":[122],"these":[124],"sophisticated":[128],"set":[129,139,147],"measures.":[131],"By":[132],"doing":[133],"so,":[134],"derive":[136],"formal":[138],"Temporal":[141],"Requirements":[142],"that":[143],"act":[144],"guidelines":[149],"which":[150],"language":[152],"extension":[155],"OWL":[157],"2":[158],"would":[159],"satisfy":[162],"order":[164],"meet":[166]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}