{"id":"https://openalex.org/W2534608142","doi":"https://doi.org/10.3233/sw-160244","title":"Querying biomedical Linked Data with natural language questions","display_name":"Querying biomedical Linked Data with natural language questions","publication_year":2016,"publication_date":"2016-10-21","ids":{"openalex":"https://openalex.org/W2534608142","doi":"https://doi.org/10.3233/sw-160244","mag":"2534608142"},"language":"en","primary_location":{"id":"doi:10.3233/sw-160244","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160244","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw244?id=semantic-web%2Fsw244","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://content.iospress.com:443/download/semantic-web/sw244?id=semantic-web%2Fsw244","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014683954","display_name":"Thierry Hamon","orcid":"https://orcid.org/0000-0002-1521-4875"},"institutions":[{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Thierry Hamon","raw_affiliation_strings":["LIMSI, CNRS, Universit\u00e9 Paris-Saclay, F-91405 Orsay, France. E-mail:\u00a0hamon@limsi.fr","Universit\u00e9 Paris 13, Sorbonne Paris Cit\u00e9, F-93430, Villetaneuse, France"],"affiliations":[{"raw_affiliation_string":"LIMSI, CNRS, Universit\u00e9 Paris-Saclay, F-91405 Orsay, France. E-mail:\u00a0hamon@limsi.fr","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210115485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Paris 13, Sorbonne Paris Cit\u00e9, F-93430, Villetaneuse, France","institution_ids":["https://openalex.org/I4210091437","https://openalex.org/I4210091279","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007781745","display_name":"Natalia Grabar","orcid":"https://orcid.org/0000-0002-0237-4554"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210087136","display_name":"Savoirs, Textes, Langage","ror":"https://ror.org/003fs1j49","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210087136","https://openalex.org/I4210150854"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Natalia Grabar","raw_affiliation_strings":["STL UMR8163 CNRS, Universit\u00e9 Lille 3, France. E-mail:\u00a0natalia.grabar@univ-lille3.fr","STL - Savoirs, Textes, Langage (STL) - UMR 8163 (Domaine Universitaire du Pont de Bois - Batiment B4 rue du Barreau - BP 60149 - 59653 VILLENEUVE D'ASCQ CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"STL UMR8163 CNRS, Universit\u00e9 Lille 3, France. E-mail:\u00a0natalia.grabar@univ-lille3.fr","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"STL - Savoirs, Textes, Langage (STL) - UMR 8163 (Domaine Universitaire du Pont de Bois - Batiment B4 rue du Barreau - BP 60149 - 59653 VILLENEUVE D'ASCQ CEDEX - France)","institution_ids":["https://openalex.org/I4210087136"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090250858","display_name":"Fleur Mougin","orcid":"https://orcid.org/0000-0002-7436-3010"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fleur Mougin","raw_affiliation_strings":["Universit\u00e9 Bordeaux, ERIAS, INSERM U1219, France. E-mail:\u00a0fleur.mougin@u-bordeaux.fr"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Bordeaux, ERIAS, INSERM U1219, France. E-mail:\u00a0fleur.mougin@u-bordeaux.fr","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I15057530","https://openalex.org/I4210106115"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014683954"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I277688954","https://openalex.org/I4210091279","https://openalex.org/I4210091437","https://openalex.org/I4210115485"],"apc_list":null,"apc_paid":null,"fwci":3.9756,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.94550033,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"4","first_page":"581","last_page":"599"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.943453311920166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8859666585922241},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.6853241920471191},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.6772005558013916},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.5525528788566589},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5377703905105591},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.5340836048126221},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.49152812361717224},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46050354838371277},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.42354512214660645},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36691156029701233},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36676138639450073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3099226951599121},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2140134871006012}],"concepts":[{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.943453311920166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8859666585922241},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.6853241920471191},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.6772005558013916},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.5525528788566589},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5377703905105591},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.5340836048126221},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.49152812361717224},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46050354838371277},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.42354512214660645},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36691156029701233},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36676138639450073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3099226951599121},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2140134871006012}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/sw-160244","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160244","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw244?id=semantic-web%2Fsw244","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-01426686v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01426686","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Semantic Web \u2013 Interoperability, Usability, Applicability, 2017, 8, pp.581-599. &#x27E8;10.3233/SW-160244&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/65215","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/65215","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3233/sw-160244","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160244","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw244?id=semantic-web%2Fsw244","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8199999928474426}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319751","display_name":"Maison Europ\u00e9enne des Sciences de l'Homme et de la Soci\u00e9t\u00e9","ror":"https://ror.org/00m090414"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2534608142.pdf","grobid_xml":"https://content.openalex.org/works/W2534608142.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W560144434","https://openalex.org/W1468923932","https://openalex.org/W1509946529","https://openalex.org/W1540862445","https://openalex.org/W1722846244","https://openalex.org/W1776549739","https://openalex.org/W1849984936","https://openalex.org/W1912466677","https://openalex.org/W1974283694","https://openalex.org/W2080945797","https://openalex.org/W2118020653","https://openalex.org/W2118877284","https://openalex.org/W2136671004","https://openalex.org/W2139865360","https://openalex.org/W2142572836","https://openalex.org/W2145734530","https://openalex.org/W2146360558","https://openalex.org/W2151149636","https://openalex.org/W2156938860","https://openalex.org/W2170146596","https://openalex.org/W2366359788","https://openalex.org/W2396348662","https://openalex.org/W2401214933","https://openalex.org/W2402496537","https://openalex.org/W2406438374","https://openalex.org/W2592209396","https://openalex.org/W2594646390","https://openalex.org/W2613196298","https://openalex.org/W6630638182"],"related_works":["https://openalex.org/W199330785","https://openalex.org/W2615202182","https://openalex.org/W98016204","https://openalex.org/W2904139343","https://openalex.org/W2767591199","https://openalex.org/W2101525042","https://openalex.org/W2968129063","https://openalex.org/W2563388676","https://openalex.org/W3150241097","https://openalex.org/W4388184885"],"abstract_inverted_index":{"Recent":[0],"and":[1,11,36,47,118,131,151,179,210],"intensive":[2],"research":[3],"in":[4,49,170],"the":[5,22,76,148,155,171,175,193],"biomedical":[6,13,65,166],"area":[7],"enabled":[8],"to":[9,30,37,88,129,135,143,153],"accumulate":[10],"disseminate":[12],"knowledge":[14,17,28,60,93,167],"through":[15],"various":[16],"bases":[18,35,168],"increasingly":[19],"available":[20,212],"on":[21,81,161,181,192],"Web.":[23],"The":[24,157,196],"exploitation":[25],"of":[26,139,147,174],"this":[27,96],"requires":[29],"create":[31],"links":[32],"between":[33],"these":[34,140],"use":[38,111],"them":[39],"jointly.":[40],"Linked":[41,66],"Data,":[42],"th":[43],"e":[44],"SPARQL":[45,77,108,149,202],"language":[46,51,83,105],"interfaces":[48],"natural":[50,82,104],"question":[52,84],"answering":[53,85],"provide":[54],"interesting":[55],"solutions":[56],"for":[57,91,102,198],"querying":[58,92],"such":[59],"bases.":[61,94],"However,":[62],"while":[63],"using":[64,75],"Data":[67],"is":[68,159,204,211],"crucial,":[69],"life-science":[70],"researchers":[71],"may":[72],"have":[73],"difficulties":[74],"language.":[78],"Interfaces":[79],"based":[80],"are":[86],"recognized":[87],"be":[89],"suitable":[90],"In":[95],"paper,":[97],"we":[98],"propose":[99],"a":[100,124,145,207],"method":[101,126,158,197],"translating":[103,199],"questions":[106,163,200],"into":[107,201],"queries.":[109,156],"We":[110,122],"Natural":[112],"Language":[113],"Processing":[114],"tools,":[115],"semantic":[116],"resources":[117],"RDF":[119],"triple":[120],"descriptions.":[121],"designed":[123,160],"four-step":[125],"which":[127],"allows":[128],"linguistically":[130],"semantically":[132],"annotate":[133],"questions,":[134,141],"perform":[136],"an":[137],"abstraction":[138],"then":[142],"build":[144],"representation":[146],"queries,":[150],"finally":[152],"generate":[154],"50":[162],"over":[164],"three":[165],"used":[169],"task":[172],"2":[173],"QALD-4":[176],"challenge":[177],"framework":[178],"evaluated":[180],"27":[182],"new":[183],"questions.":[184],"It":[185],"achieves":[186],"good":[187],"performance":[188],"with":[189],"0.78":[190],"F-measure":[191],"test":[194],"set.":[195],"queries":[203],"implemented":[205],"as":[206],"Perl":[208],"module":[209],"at":[213],"http://search.cpan.org/~thhamon/RDF-NLP-SPARQLQuery/.":[214]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
