{"id":"https://openalex.org/W2314422014","doi":"https://doi.org/10.3233/sw-160220","title":"Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1","display_name":"Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1","publication_year":2016,"publication_date":"2016-10-11","ids":{"openalex":"https://openalex.org/W2314422014","doi":"https://doi.org/10.3233/sw-160220","mag":"2314422014"},"language":"en","primary_location":{"id":"doi:10.3233/sw-160220","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160220","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw220?id=semantic-web%2Fsw220","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://content.iospress.com:443/download/semantic-web/sw220?id=semantic-web%2Fsw220","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036050137","display_name":"Nico M. Franz","orcid":"https://orcid.org/0000-0001-7089-7018"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nico M. Franz","raw_affiliation_strings":["School of Life Sciences, PO Box 874501, Arizona State University, Tempe, AZ 85287, USA"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences, PO Box 874501, Arizona State University, Tempe, AZ 85287, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091383364","display_name":"Mingmin Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingmin Chen","raw_affiliation_strings":["Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046559224","display_name":"Parisa Kianmajd","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parisa Kianmajd","raw_affiliation_strings":["Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067203668","display_name":"Shizhuo Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shizhuo Yu","raw_affiliation_strings":["Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2063 Kemper Hall, 1 Shields Avenue, University of California at Davis, Davis CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014091778","display_name":"Shawn Bowers","orcid":"https://orcid.org/0000-0002-2972-0197"},"institutions":[{"id":"https://openalex.org/I119888943","display_name":"Gonzaga University","ror":"https://ror.org/03ze70h02","country_code":"US","type":"education","lineage":["https://openalex.org/I119888943"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn Bowers","raw_affiliation_strings":["Department of Computer Science, 502 East Boone Avenue, AD Box 26, Gonzaga University, Spokane, WA 99258, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 502 East Boone Avenue, AD Box 26, Gonzaga University, Spokane, WA 99258, USA","institution_ids":["https://openalex.org/I119888943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046352879","display_name":"Alan S. Weakley","orcid":"https://orcid.org/0000-0003-2093-3767"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan S. Weakley","raw_affiliation_strings":["Department of Biology, Coker Hall, 120 South Road, University of North Carolina, Chapel Hill, NC 27599, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Coker Hall, 120 South Road, University of North Carolina, Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057600294","display_name":"Bertram Lud\u00e4scher","orcid":"https://orcid.org/0000-0001-9140-936X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bertram Lud\u00e4scher","raw_affiliation_strings":["Graduate School of Library and Information Science, 510 East Daniel Street, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA"],"affiliations":[{"raw_affiliation_string":"Graduate School of Library and Information Science, 510 East Daniel Street, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5036050137"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":null,"apc_paid":null,"fwci":4.5321,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.94917816,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"6","first_page":"645","last_page":"667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/andropogon","display_name":"Andropogon","score":0.7103183269500732},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.37636053562164307},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2969978451728821},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2276996672153473}],"concepts":[{"id":"https://openalex.org/C2781206824","wikidata":"https://www.wikidata.org/wiki/Q310768","display_name":"Andropogon","level":2,"score":0.7103183269500732},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.37636053562164307},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2969978451728821},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2276996672153473}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/sw-160220","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160220","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw220?id=semantic-web%2Fsw220","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.3233/sw-160220","is_oa":true,"landing_page_url":"https://doi.org/10.3233/sw-160220","pdf_url":"https://content.iospress.com:443/download/semantic-web/sw220?id=semantic-web%2Fsw220","source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G1473721797","display_name":null,"funder_award_id":"1155984","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5311962964","display_name":"Collaborative Research: ABI: Innovation: The Global Names Architecture, an infrastructure for unifying taxonomic databases and services for managers of biological information.","funder_award_id":"1342595","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5454034950","display_name":"BCSP:   Collaborative Research:   ABI Development: Exploring Taxon Concepts (ETC) through analysing fine-grained semantic markup of descriptive literature","funder_award_id":"1147273","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5581497425","display_name":null,"funder_award_id":"DEB-1155984","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2314422014.pdf","grobid_xml":"https://content.openalex.org/works/W2314422014.grobid-xml"},"referenced_works_count":101,"referenced_works":["https://openalex.org/W852874","https://openalex.org/W14688729","https://openalex.org/W22495568","https://openalex.org/W154189287","https://openalex.org/W167227476","https://openalex.org/W188284870","https://openalex.org/W582812634","https://openalex.org/W653997810","https://openalex.org/W1482532598","https://openalex.org/W1494751716","https://openalex.org/W1517485365","https://openalex.org/W1520085989","https://openalex.org/W1527612193","https://openalex.org/W1530608603","https://openalex.org/W1557143830","https://openalex.org/W1567623649","https://openalex.org/W1570319308","https://openalex.org/W1575708718","https://openalex.org/W1577252009","https://openalex.org/W1587191403","https://openalex.org/W1605075824","https://openalex.org/W1782312652","https://openalex.org/W1806326109","https://openalex.org/W1836492352","https://openalex.org/W1969029468","https://openalex.org/W1988545508","https://openalex.org/W2001914359","https://openalex.org/W2004610394","https://openalex.org/W2008116984","https://openalex.org/W2009664200","https://openalex.org/W2016186775","https://openalex.org/W2018845823","https://openalex.org/W2028407198","https://openalex.org/W2028913497","https://openalex.org/W2044988198","https://openalex.org/W2045787313","https://openalex.org/W2052153382","https://openalex.org/W2054952488","https://openalex.org/W2064657914","https://openalex.org/W2070724454","https://openalex.org/W2075182631","https://openalex.org/W2077415092","https://openalex.org/W2079090049","https://openalex.org/W2079335886","https://openalex.org/W2080019484","https://openalex.org/W2103514807","https://openalex.org/W2106581684","https://openalex.org/W2107347656","https://openalex.org/W2116988018","https://openalex.org/W2118567850","https://openalex.org/W2119013121","https://openalex.org/W2119409989","https://openalex.org/W2125793391","https://openalex.org/W2126429177","https://openalex.org/W2134441603","https://openalex.org/W2134632757","https://openalex.org/W2134945449","https://openalex.org/W2135800595","https://openalex.org/W2137047010","https://openalex.org/W2137537565","https://openalex.org/W2139934466","https://openalex.org/W2143597777","https://openalex.org/W2148510952","https://openalex.org/W2157346602","https://openalex.org/W2165625764","https://openalex.org/W2166602939","https://openalex.org/W2167541073","https://openalex.org/W2168132651","https://openalex.org/W2171109356","https://openalex.org/W2171435063","https://openalex.org/W2181170718","https://openalex.org/W2205735312","https://openalex.org/W2218044763","https://openalex.org/W2227270210","https://openalex.org/W2297344498","https://openalex.org/W2310479359","https://openalex.org/W2330055391","https://openalex.org/W2401991345","https://openalex.org/W2480699644","https://openalex.org/W2550847532","https://openalex.org/W2611894836","https://openalex.org/W2615447451","https://openalex.org/W2615858777","https://openalex.org/W2796066049","https://openalex.org/W2951002538","https://openalex.org/W2971037510","https://openalex.org/W3196727607","https://openalex.org/W4206755350","https://openalex.org/W4231106801","https://openalex.org/W4236280034","https://openalex.org/W4238387639","https://openalex.org/W4241410814","https://openalex.org/W4250791618","https://openalex.org/W4252508672","https://openalex.org/W4253067724","https://openalex.org/W4285719527","https://openalex.org/W4380762749","https://openalex.org/W6600616296","https://openalex.org/W6632128152","https://openalex.org/W6675340434","https://openalex.org/W6764359673"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W45780613","https://openalex.org/W4313040693","https://openalex.org/W30360766","https://openalex.org/W4301149566","https://openalex.org/W2266801300","https://openalex.org/W2328925131","https://openalex.org/W2090602397","https://openalex.org/W2560046654"],"abstract_inverted_index":{"We":[0,48],"present":[1],"a":[2],"novel,":[3],"logic-based":[4],"solution":[5],"to":[6,24,65,72],"the":[7,11,54],"challenge":[8,21,51],"of":[9,13,34,56,78],"reconciling":[10],"meanings":[12],"taxonomic":[14,30,46,57],"names":[15,31],"across":[16],"multiple":[17],"biological":[18],"taxonomies.":[19],"The":[20],"arises":[22],"due":[23],"limitations":[25],"inherent":[26],"in":[27,42],"using":[28],"type-anchored":[29],"as":[32],"identifiers":[33],"granular":[35],"semantic":[36],"similarities":[37],"and":[38,44,68,95],"differences":[39],"being":[40],"expressed":[41],"original":[43],"revised":[45],"classifications.":[47],"address":[49],"this":[50],"through:":[52],"(1)":[53],"use":[55],"concept":[58],"labels":[59],"-thereby":[60],"individuating":[61],"name":[62],"usages":[63],"according":[64],"particular":[66],"sources":[67],"allowing":[69],"each":[70],"taxonomy":[71],"be":[73],"recognized":[74],"separately;":[75],"(2)":[76],"sets":[77],"user-provided":[79],"Region":[80],"Connection":[81],"Calculus":[82],"articulations":[83],"among":[84],"concepts":[85],"(RCC-5:":[86],"congruence,":[87],"proper":[88,91],"inclusion,":[89,92],"inverse":[90],"overlap,":[93],"exclusion);":[94]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}