{"id":"https://openalex.org/W2234406841","doi":"https://doi.org/10.3233/sw-150189","title":"Publishing DisGeNET as nanopublications","display_name":"Publishing DisGeNET as nanopublications","publication_year":2016,"publication_date":"2016-06-23","ids":{"openalex":"https://openalex.org/W2234406841","doi":"https://doi.org/10.3233/sw-150189","mag":"2234406841"},"language":"en","primary_location":{"id":"doi:10.3233/sw-150189","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-150189","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080481806","display_name":"N\u00faria Queralt-Rosi\u00f1ach","orcid":"https://orcid.org/0000-0003-0169-8159"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"N\u00faria Queralt-Rosinach","raw_affiliation_strings":["IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016394820","display_name":"Tobias Kuhn","orcid":"https://orcid.org/0000-0002-1267-0234"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tobias Kuhn","raw_affiliation_strings":["Department of Humanities, Social and Political Sciences, ETH Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Humanities, Social and Political Sciences, ETH Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083060099","display_name":"Christine Chichester","orcid":"https://orcid.org/0000-0001-6818-334X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christine Chichester","raw_affiliation_strings":["CALIPHO group, Swiss Institute of Bioinformatics, CMU rue Michel Servet 1, 1211 Geneva 4, Switzerland"],"affiliations":[{"raw_affiliation_string":"CALIPHO group, Swiss Institute of Bioinformatics, CMU rue Michel Servet 1, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michel Dumontier","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056335906","display_name":"Ferr\u00e1n Sanz","orcid":"https://orcid.org/0000-0002-7534-7661"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ferran Sanz","raw_affiliation_strings":["IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028427590","display_name":"Laura I. Furlong","orcid":"https://orcid.org/0000-0002-9383-528X"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Laura I. Furlong","raw_affiliation_strings":["IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"IBI group, Research Programme on Biomedical Informatics (GRIB), IMIM, DCEXS, Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028427590"],"corresponding_institution_ids":["https://openalex.org/I170486558"],"apc_list":null,"apc_paid":null,"fwci":3.4862,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.92570544,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"5","first_page":"519","last_page":"528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7799935340881348},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6100751161575317},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5769956707954407},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5310046672821045},{"id":"https://openalex.org/keywords/software-versioning","display_name":"Software versioning","score":0.5091933608055115},{"id":"https://openalex.org/keywords/assertion","display_name":"Assertion","score":0.5049718022346497},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4869197607040405},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4751676917076111},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4654370844364166},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.4488893449306488},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4424080550670624},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.42340216040611267},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.21018800139427185},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1510331928730011}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7799935340881348},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6100751161575317},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5769956707954407},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5310046672821045},{"id":"https://openalex.org/C198140048","wikidata":"https://www.wikidata.org/wiki/Q10859422","display_name":"Software versioning","level":3,"score":0.5091933608055115},{"id":"https://openalex.org/C40422974","wikidata":"https://www.wikidata.org/wiki/Q741248","display_name":"Assertion","level":2,"score":0.5049718022346497},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4869197607040405},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4751676917076111},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4654370844364166},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.4488893449306488},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4424080550670624},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.42340216040611267},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.21018800139427185},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1510331928730011},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3233/sw-150189","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-150189","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire_cris_publications/8db422ff-9a58-43af-bf68-9d2a44802f91","is_oa":false,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/8db422ff-9a58-43af-bf68-9d2a44802f91","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Queralt-Rosinach, N, Kuhn, T, Chichester, C, Dumontier, M, Sanz, F & Furlong, L I 2016, 'Publishing DisGeNET as nanopublications', Semantic web, vol. 7, no. 5, pp. 519-528. https://doi.org/10.3233/SW-150189","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:vu:oai:research.vu.nl:publications/c7b4014b-1ceb-4e2d-9480-33cee28c20c1","is_oa":false,"landing_page_url":"https://research.vu.nl/en/publications/c7b4014b-1ceb-4e2d-9480-33cee28c20c1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web, 7(5), 519 - 528. IOS Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.672.9675","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.672.9675","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.semantic-web-journal.net/system/files/swj879.pdf","raw_type":"text"},{"id":"pmh:oai:dare.ubvu.vu.nl:1871/53944","is_oa":false,"landing_page_url":"http://hdl.handle.net/1871/53944","pdf_url":null,"source":{"id":"https://openalex.org/S4306400546","display_name":"Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Semantic Web","raw_type":"Article / Letter to editor"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W103049419","https://openalex.org/W1528439060","https://openalex.org/W1546703885","https://openalex.org/W1802483710","https://openalex.org/W1806951014","https://openalex.org/W1925834822","https://openalex.org/W2033237963","https://openalex.org/W2035317019","https://openalex.org/W2040676413","https://openalex.org/W2064060400","https://openalex.org/W2083737859","https://openalex.org/W2098896780","https://openalex.org/W2106310505","https://openalex.org/W2113466530","https://openalex.org/W2117513900","https://openalex.org/W2135383920","https://openalex.org/W2136437513","https://openalex.org/W2144086069","https://openalex.org/W2144427809","https://openalex.org/W2147418473","https://openalex.org/W2153531925","https://openalex.org/W2405257649","https://openalex.org/W3098549168","https://openalex.org/W3103908354"],"related_works":["https://openalex.org/W1498103021","https://openalex.org/W2035655557","https://openalex.org/W2776293731","https://openalex.org/W2965230088","https://openalex.org/W4293389049","https://openalex.org/W1534806717","https://openalex.org/W2949436180","https://openalex.org/W2550790379","https://openalex.org/W4243630814","https://openalex.org/W14857909"],"abstract_inverted_index":{"The":[0,21],"increasing":[1],"and":[2,32,34,46,57,78,85,101,126,159,173],"unprecedented":[3],"publication":[4,53],"rate":[5],"in":[6,17],"the":[7,18,43,52,60,73,91,111,124,145,149,175,185],"biomedical":[8],"field":[9],"is":[10,30,63,154],"a":[11,115],"major":[12],"bottleneck":[13],"for":[14,151],"knowledge":[15],"discovery":[16],"Life":[19],"Sciences.":[20],"manual":[22],"curation":[23],"of":[24,49,54,76,94,114,123,142,148,177],"facts":[25],"from":[26],"published":[27],"scientific":[28,55],"papers":[29],"slow":[31],"inefficient,":[33],"therefore":[35],"new":[36,69],"approaches":[37],"are":[38,110],"needed":[39],"that":[40,119],"can":[41],"enable":[42],"automatic,":[44],"scalable":[45],"reliable":[47],"extraction":[48],"assertions.":[50],"While":[51],"assertions":[56],"datasets":[58,183],"on":[59,184],"Semantic":[61,187],"Web":[62],"gaining":[64],"traction,":[65],"it":[66],"also":[67],"creates":[68],"challenges":[70],"such":[71],"as":[72,98,137,139],"proper":[74],"representation":[75],"provenance":[77,102],"versioning.":[79],"Here,":[80,164],"we":[81,165],"address":[82],"these":[83],"issues":[84],"describe":[86,166],"our":[87,167,179],"efforts":[88],"to":[89,156,169,181],"represent":[90],"DisGeNET":[92,133],"database":[93],"human":[95],"gene-disease":[96],"associations":[97],"permanent,":[99],"immutable,":[100],"rich":[103],"digital":[104],"objects":[105],"called":[106],"nanopublications.":[107],"Our":[108],"nanopublications":[109],"first":[112],"instance":[113],"Linked":[116],"Data":[117],"model":[118],"ensures":[120],"stable":[121],"interlinking":[122],"assertion":[125,153],"its":[127],"metadata":[128],"by":[129],"Trusty":[130],"URIs.":[131],"As":[132],"integrates":[134],"manually":[135],"curated":[136],"well":[138],"text-mined":[140],"data":[141,180],"different":[143],"origins,":[144],"semantic":[146],"description":[147],"evidence":[150],"each":[152],"important":[155],"provide":[157],"trust":[158],"allow":[160],"evidence-based":[161],"hypothesis":[162],"generation.":[163],"steps":[168],"ensure":[170],"high":[171],"quality":[172],"demonstrate":[174],"utility":[176],"linking":[178],"other":[182],"emerging":[186],"Web.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}