{"id":"https://openalex.org/W1806951014","doi":"https://doi.org/10.3233/sw-140149","title":"Converting neXtProt into Linked Data and nanopublications","display_name":"Converting neXtProt into Linked Data and nanopublications","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W1806951014","doi":"https://doi.org/10.3233/sw-140149","mag":"1806951014"},"language":"en","primary_location":{"id":"doi:10.3233/sw-140149","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-140149","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://archive-ouverte.unige.ch/unige:75377","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083060099","display_name":"Christine Chichester","orcid":"https://orcid.org/0000-0001-6818-334X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christine Chichester","raw_affiliation_strings":["CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054672696","display_name":"Oliver Karch","orcid":null},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck KGaA, Darmstadt (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Karch","raw_affiliation_strings":["Biomarker Technologies, Discovery Bioinformatics, Merck Serono, Frankfurter Str. 250, 64271 Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomarker Technologies, Discovery Bioinformatics, Merck Serono, Frankfurter Str. 250, 64271 Darmstadt, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068838014","display_name":"Lydie Lane","orcid":"https://orcid.org/0000-0002-9818-3030"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lydie Lane","raw_affiliation_strings":["CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070745825","display_name":"Barend Mons","orcid":null},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Barend Mons","raw_affiliation_strings":["Netherlands Bioinformatics Centre, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Netherlands Bioinformatics Centre, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069843378","display_name":"Amos Bairoch","orcid":"https://orcid.org/0000-0003-2826-6444"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Amos Bairoch","raw_affiliation_strings":["CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO group, Swiss Institute of Bioinformatics, CMU 1 rue Michel Serve, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.7111,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.90309492,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"6","issue":"2","first_page":"147","last_page":"153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7706045508384705},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6417933702468872},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6115369200706482},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5569526553153992},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.537706196308136},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5323567390441895},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.49637991189956665},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.4818612039089203},{"id":"https://openalex.org/keywords/disk-formatting","display_name":"Disk formatting","score":0.47183850407600403},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4384026825428009},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.42057913541793823},{"id":"https://openalex.org/keywords/data-model","display_name":"Data model (GIS)","score":0.41178014874458313},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38550862669944763},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37765341997146606},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3382052183151245},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.26209139823913574},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.15822932124137878}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7706045508384705},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6417933702468872},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6115369200706482},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5569526553153992},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.537706196308136},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5323567390441895},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.49637991189956665},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.4818612039089203},{"id":"https://openalex.org/C88006597","wikidata":"https://www.wikidata.org/wiki/Q690117","display_name":"Disk formatting","level":2,"score":0.47183850407600403},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4384026825428009},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.42057913541793823},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.41178014874458313},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38550862669944763},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37765341997146606},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3382052183151245},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.26209139823913574},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.15822932124137878},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/sw-140149","is_oa":false,"landing_page_url":"https://doi.org/10.3233/sw-140149","pdf_url":null,"source":{"id":"https://openalex.org/S4210177235","display_name":"Semantic Web","issn_l":"1570-0844","issn":["1570-0844","2210-4968"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Semantic Web","raw_type":"journal-article"},{"id":"pmh:oai:unige.ch:unige:75377","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:75377","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1570-0844","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:unige.ch:unige:75377","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:75377","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1570-0844","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1236321187","https://openalex.org/W1561585380","https://openalex.org/W1969709265","https://openalex.org/W2024858956","https://openalex.org/W2029533042","https://openalex.org/W2040022355","https://openalex.org/W2084292968","https://openalex.org/W2092543424","https://openalex.org/W2093519416","https://openalex.org/W2096525273","https://openalex.org/W2096939566","https://openalex.org/W2098174226","https://openalex.org/W2103017472","https://openalex.org/W2114833437","https://openalex.org/W2116238734","https://openalex.org/W2142286883","https://openalex.org/W2149198894","https://openalex.org/W2152577585","https://openalex.org/W2153349010","https://openalex.org/W2161062388","https://openalex.org/W2912191242","https://openalex.org/W2912486915","https://openalex.org/W3145366215","https://openalex.org/W4211000692","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W1550792544","https://openalex.org/W2155929612","https://openalex.org/W199330785","https://openalex.org/W2267627180","https://openalex.org/W2402575682","https://openalex.org/W2396236980","https://openalex.org/W2187569332","https://openalex.org/W98016204","https://openalex.org/W2741022245","https://openalex.org/W2293828766"],"abstract_inverted_index":{"neXtProt":[0],"provides":[1],"a":[2],"comprehensive":[3],"knowledgebase":[4],"on":[5],"human":[6],"proteins":[7],"complemented":[8],"by":[9],"an":[10],"extensive":[11],"cross":[12],"incorporation":[13],"of":[14,22],"annotations":[15],"from":[16],"many":[17],"databases.":[18],"With":[19],"the":[20],"diversity":[21],"published":[23],"data,":[24],"provenance":[25],"information":[26],"becomes":[27],"critical":[28],"to":[29],"providing":[30],"reliable":[31]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
