{"id":"https://openalex.org/W7161977000","doi":"https://doi.org/10.3233/shti260726","title":"Challenges of Ontology-Based Concept Normalization for Deep Phenotyping in Rare Skin Diseases","display_name":"Challenges of Ontology-Based Concept Normalization for Deep Phenotyping in Rare Skin Diseases","publication_year":2026,"publication_date":"2026-05-21","ids":{"openalex":"https://openalex.org/W7161977000","doi":"https://doi.org/10.3233/shti260726","pmid":"https://pubmed.ncbi.nlm.nih.gov/42175393"},"language":"en","primary_location":{"id":"doi:10.3233/shti260726","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti260726","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti260726","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025893544","display_name":"Pauline Bataille","orcid":"https://orcid.org/0000-0002-6975-5941"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210126712","display_name":"H\u00f4pital Robert-Debr\u00e9","ror":"https://ror.org/02dcqy320","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210126712"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pauline Bataille","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","Department of Dermatology, Reference Center for Genodermatoses (MAGEC), Saint-Louis Hospital, Assistance Publique - H\u00f4pitaux de Paris, Paris, France","Department of Paediatric Dermatology, Robert-Debr\u00e9 Hospital, Assistance Publique \u2013 H\u00f4pitaux de Paris, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]},{"raw_affiliation_string":"Department of Dermatology, Reference Center for Genodermatoses (MAGEC), Saint-Louis Hospital, Assistance Publique - H\u00f4pitaux de Paris, Paris, France","institution_ids":["https://openalex.org/I4210097159"]},{"raw_affiliation_string":"Department of Paediatric Dermatology, Robert-Debr\u00e9 Hospital, Assistance Publique \u2013 H\u00f4pitaux de Paris, Paris, France","institution_ids":["https://openalex.org/I4210097159","https://openalex.org/I4210126712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002330670","display_name":"Carole Faviez","orcid":"https://orcid.org/0000-0002-1500-0236"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Carole Faviez","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136635590","display_name":"Xiaomeng Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Xiaomeng Wang","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081746456","display_name":"Nesrine Bannour","orcid":"https://orcid.org/0000-0003-2348-6691"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nesrine Bannour","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022208347","display_name":"M Figueredo Vincent","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Vincent","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136710489","display_name":"Christine Bodemer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christine Bodemer","raw_affiliation_strings":["Department of Dermatology, Reference Center for Genodermatoses (MAGEC), Necker Hospital, Assistance Publique - H\u00f4pitaux de Paris, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, Reference Center for Genodermatoses (MAGEC), Necker Hospital, Assistance Publique - H\u00f4pitaux de Paris, Paris, France","institution_ids":["https://openalex.org/I4210097159"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5136645121","display_name":"Nicolas Garcelon","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210165077","display_name":"Institut des Maladies G\u00e9n\u00e9tiques Imagine","ror":"https://ror.org/05rq3rb55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210100892","https://openalex.org/I4210165077"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Garcelon","raw_affiliation_strings":["Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Bioinformatics Lab, Institut Imagine, INSERM UMR 1163, Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210165077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57433394,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"336","issue":null,"first_page":"2503","last_page":"2508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4406000077724457,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4406000077724457,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.42579999566078186,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11650","display_name":"Skin and Cellular Biology Research","score":0.031099999323487282,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8565999865531921},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4505999982357025},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.4408999979496002},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.3555000126361847},{"id":"https://openalex.org/keywords/epidermolysis-bullosa","display_name":"Epidermolysis bullosa","score":0.34450000524520874},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.32839998602867126},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.3246000111103058}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8565999865531921},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5827999711036682},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5327000021934509},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48489999771118164},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4505999982357025},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.4408999979496002},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38659998774528503},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3617999851703644},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.3555000126361847},{"id":"https://openalex.org/C2781207856","wikidata":"https://www.wikidata.org/wiki/Q923020","display_name":"Epidermolysis bullosa","level":2,"score":0.34450000524520874},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.32839998602867126},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.32760000228881836},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.3246000111103058},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.3116999864578247},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.2944999933242798},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.29190000891685486},{"id":"https://openalex.org/C2778143727","wikidata":"https://www.wikidata.org/wiki/Q1820650","display_name":"Readability","level":2,"score":0.2912999987602234},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2800000011920929},{"id":"https://openalex.org/C2779332521","wikidata":"https://www.wikidata.org/wiki/Q1820694","display_name":"Legibility","level":2,"score":0.27900001406669617}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D016108","descriptor_name":"Epidermolysis Bullosa Dystrophica","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti260726","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti260726","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:42175393","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42175393","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3233/shti260726","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti260726","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.7098603844642639,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Extracting":[0],"and":[1,49,55,63,72,102,161,281],"standardizing":[2],"phenotypic":[3],"information":[4],"from":[5,95,153],"free-text":[6],"medical":[7,286],"reports":[8,97],"remains":[9],"a":[10,35,46,88,122,165,200,234,240,258],"main":[11,218],"challenge":[12],"in":[13,120,228,246],"biomedical":[14],"natural":[15,70],"language":[16,287],"processing":[17],"(NLP).":[18],"Conceptual":[19],"normalization,":[20],"which":[21],"maps":[22],"textual":[23,96],"mentions":[24],"to":[25,60,78,86,98,103,199,270],"standardized":[26],"vocabularies":[27],"such":[28],"as":[29],"the":[30,68,99,107,170,183,254,276,282],"UMLS":[31,100,108,201],"or":[32,202,249,264],"HPO,":[33],"is":[34,45,76],"key":[36],"step":[37],"for":[38,90,125],"deep":[39],"phenotyping.":[40],"Dystrophic":[41],"epidermolysis":[42,146],"bullosa":[43,147],"(DEB)":[44],"rare":[47,126],"severe":[48],"heterogeneous":[50],"skin":[51,54],"disorder":[52],"causing":[53],"mucosal":[56],"fragility":[57],"that":[58],"leads":[59],"early":[61],"morbidity":[62],"mortality.":[64],"To":[65],"better":[66],"understand":[67],"disease's":[69],"history":[71],"severity":[73],"spectrum,":[74],"it":[75],"important":[77],"comprehensively":[79],"identify":[80],"DEB-related":[81,110],"phenotypes.":[82,111],"This":[83],"study":[84,113],"aimed":[85],"assess":[87],"pipeline":[89],"automatically":[91,151],"mapping":[92],"clinical":[93,138,154],"terms":[94],"Metathesaurus":[101],"evaluate":[104],"how":[105],"well":[106],"covers":[109],"The":[112],"was":[114],"conducted":[115],"at":[116,175],"Necker-Enfants":[117],"Malades":[118],"Hospital":[119],"Paris,":[121],"reference":[123],"center":[124],"diseases,":[127],"using":[128,156,164,188],"its":[129],"\"Dr":[130],"Warehouse\"":[131],"database,":[132],"containing":[133],"more":[134],"than":[135],"11":[136],"million":[137],"documents.":[139],"It":[140],"involved":[141],"198":[142,171],"patients":[143,173],"with":[144],"dystrophic":[145],"(DEB).":[148],"Phenotypes":[149],"were":[150,180,196,207],"extracted":[152],"texts":[155],"named":[157],"entity":[158],"recognition":[159],"(NER)":[160],"then":[162],"normalized":[163],"cosine":[166],"similarity":[167],"method.":[168],"Among":[169],"DEB":[172],"followed":[174],"Necker":[176],"Hospital,":[177],"14,734":[178],"documents":[179],"analyzed,":[181],"allowing":[182],"extraction":[184,236],"of":[185,212,220,239,261,278,284],"33,347":[186],"phenotypes":[187,215,224,232,267],"an":[189],"NER":[190],"model.":[191],"Of":[192],"these":[193],"phenotypes,":[194],"13,485":[195],"correctly":[197],"mapped":[198],"HPO":[203],"concept,":[204],"while":[205],"19,862":[206],"not.":[208],"A":[209],"manual":[210],"evaluation":[211],"300":[213],"unmapped":[214],"revealed":[216],"five":[217],"causes":[219],"failure:":[221],"overly":[222,262],"specific":[223,263],"(72%),":[225],"missing":[226,244],"synonyms":[227],"terminologies":[229,247],"(30%),":[230],"multiple":[231],"within":[233],"single":[235],"(15%),":[237],"absence":[238],"real":[241],"phenotype":[242],"(9%),":[243],"concepts":[245],"(3%),":[248],"spelling/grammatical":[250],"errors":[251],"(3%).":[252],"Despite":[253],"initial":[255],"association":[256],"failure,":[257],"significant":[259],"proportion":[260],"poorly":[265],"formulated":[266],"actually":[268],"corresponded":[269],"existing":[271],"concepts.":[272],"These":[273],"results":[274],"highlight":[275],"limitations":[277],"current":[279],"ontologies":[280],"challenges":[283],"automatic":[285],"processing.":[288]},"counts_by_year":[],"updated_date":"2026-08-19T15:00:24.278416","created_date":"2026-05-22T00:00:00"}
