{"id":"https://openalex.org/W4413956452","doi":"https://doi.org/10.3233/shti251402","title":"Medical Entity Linking in Low-Resource Settings with Fine-Tuning-Free LLMs","display_name":"Medical Entity Linking in Low-Resource Settings with Fine-Tuning-Free LLMs","publication_year":2025,"publication_date":"2025-09-03","ids":{"openalex":"https://openalex.org/W4413956452","doi":"https://doi.org/10.3233/shti251402","pmid":"https://pubmed.ncbi.nlm.nih.gov/40899548"},"language":"en","primary_location":{"id":"doi:10.3233/shti251402","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251402","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti251402","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5117573308","display_name":"Suteera Seeha","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Suteera Seeha","raw_affiliation_strings":["Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I4210152232"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039035898","display_name":"Martin Boeker","orcid":"https://orcid.org/0000-0003-2972-2042"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Martin Boeker","raw_affiliation_strings":["Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I4210152232"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029707385","display_name":"Luise Modersohn","orcid":"https://orcid.org/0000-0002-8258-4366"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Luise Modersohn","raw_affiliation_strings":["Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8258-4366","affiliations":[{"raw_affiliation_string":"Chair of Medical Informatics, Institute of AI and Informatics in Medicine (AIIM), TUM University Hospital, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I4210152232"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210152232"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.3830679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"331","issue":null,"first_page":"245","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3871999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3871999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.3671000003814697,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.16940000653266907,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8271733522415161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8122056126594543},{"id":"https://openalex.org/keywords/synonym","display_name":"Synonym (taxonomy)","score":0.6588761210441589},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6577726602554321},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.587097704410553},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5409587025642395},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.5319842100143433},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.528069019317627},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.49685123562812805},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.49630266427993774},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4827398657798767},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.47896507382392883},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4785526394844055},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47459954023361206},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.45759114623069763},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.43867459893226624},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4198075532913208},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.19766050577163696},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.15199795365333557},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09100028872489929}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8271733522415161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8122056126594543},{"id":"https://openalex.org/C173483453","wikidata":"https://www.wikidata.org/wiki/Q1040689","display_name":"Synonym (taxonomy)","level":3,"score":0.6588761210441589},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6577726602554321},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.587097704410553},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5409587025642395},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.5319842100143433},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.528069019317627},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.49685123562812805},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.49630266427993774},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4827398657798767},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.47896507382392883},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4785526394844055},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47459954023361206},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.45759114623069763},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.43867459893226624},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4198075532913208},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.19766050577163696},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.15199795365333557},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09100028872489929},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092943","descriptor_name":"Resource-Limited Settings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti251402","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251402","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40899548","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40899548","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti251402","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251402","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2022609434","https://openalex.org/W1483238188","https://openalex.org/W2054173104","https://openalex.org/W2786361492","https://openalex.org/W2257399947","https://openalex.org/W2051764263","https://openalex.org/W2935705348","https://openalex.org/W2358632292","https://openalex.org/W2502807948","https://openalex.org/W2069035364"],"abstract_inverted_index":{"INTRODUCTION:":[0],"Medical":[1],"entity":[2,70,139,173,217,246],"linking":[3,71,188,247],"is":[4,50,161,218,254,277],"an":[5,103,164],"important":[6],"task":[7],"in":[8,24,61,146,248],"biomedical":[9],"natural":[10],"language":[11,58],"processing,":[12],"aiming":[13],"to":[14,52,80,169,243,280,288],"align":[15],"textual":[16],"mentions":[17],"of":[18,47,56,272],"medical":[19,69,245],"concepts":[20,23],"with":[21,102,132,166],"standardized":[22],"ontologies.":[25],"Most":[26],"existing":[27],"approaches":[28],"rely":[29],"on":[30,180],"supervised":[31,88,197,258],"models":[32,59],"or":[33,268],"domain-specific":[34],"embeddings,":[35],"which":[36],"require":[37],"large":[38,57,270],"datasets":[39],"and":[40,66,75,78,87,112,142,148,157,283,291],"significant":[41],"computational":[42],"resources.":[43],"OBJECTIVE:":[44],"The":[45,200,275],"objective":[46],"this":[48,82],"work":[49],"(1)":[51],"investigate":[53],"the":[54,154,171,175,181,208,215,220,241],"effectiveness":[55],"(LLMs)":[60],"improving":[62],"both":[63,153],"candidate":[64,136,176,201],"generation":[65,202],"disambiguation":[67,209],"for":[68,119],"through":[72,105],"synonym":[73],"expansion":[74],"in-context":[76,106],"learning,":[77],"(2)":[79],"evaluate":[81],"approach":[83,97,185,276],"against":[84],"traditional":[85],"string-matching":[86],"methods.":[89,199],"METHODS:":[90],"We":[91,223],"propose":[92],"a":[93,262,269],"simple":[94],"yet":[95],"effective":[96],"that":[98,226,238],"combines":[99],"string":[100,126,192],"matching":[101,127,193],"LLM":[104,165],"learning.":[107],"Our":[108,122,235],"method":[109,253],"avoids":[110],"fine-tuning":[111,267],"minimizes":[113],"annotation":[114],"requirements,":[115],"making":[116],"it":[117,260],"suitable":[118],"low-resource":[120,249],"settings.":[121,250],"system":[123],"enhances":[124],"fuzzy":[125],"by":[128,257],"expanding":[129],"mention":[130],"spans":[131],"LLM-generated":[133,227],"synonyms":[134,143],"during":[135],"generation.":[137],"UMLS":[138],"names,":[140],"aliases,":[141],"are":[144,150],"indexed":[145],"Elasticsearch,":[147],"candidates":[149],"retrieved":[151],"using":[152,163],"original":[155],"span":[156],"generated":[158],"variants.":[159],"Disambiguation":[160],"performed":[162],"few-shot":[167],"prompting":[168],"select":[170],"correct":[172,216],"from":[174],"list.":[177],"RESULTS:":[178],"Evaluated":[179],"MedMentions":[182],"dataset,":[183],"our":[184,252],"achieves":[186,211],"56%":[187],"accuracy,":[189],"outperforming":[190],"baseline":[191],"but":[194],"falling":[195],"behind":[196],"learning":[198],"component":[203],"reaches":[204],"70%":[205],"recall@5,":[206],"while":[207],"step":[210],"80%":[212],"accuracy":[213],"when":[214],"among":[219],"top":[221],"five.":[222],"also":[224,278],"observe":[225],"descriptions":[228],"do":[229],"not":[230],"always":[231],"improve":[232],"accuracy.":[233],"CONCLUSION:":[234],"results":[236],"demonstrate":[237],"LLMs":[239],"have":[240],"potential":[242],"support":[244],"Although":[251],"still":[255],"outperformed":[256],"models,":[259],"remains":[261],"lightweight":[263],"alternative,":[264],"requiring":[265],"no":[266],"amount":[271],"annotated":[273],"data.":[274],"adaptable":[279],"other":[281],"domains":[282],"ontologies":[284],"beyond":[285],"biomedicine":[286],"due":[287],"its":[289],"flexible":[290],"domain-agnostic":[292],"design.":[293]},"counts_by_year":[],"updated_date":"2026-07-05T07:55:05.734416","created_date":"2025-10-10T00:00:00"}
