{"id":"https://openalex.org/W4413970667","doi":"https://doi.org/10.3233/shti251379","title":"AI for Extracting Pre-Analytical Variability Data from Biomedical Literature: Feasibility and Validation.","display_name":"AI for Extracting Pre-Analytical Variability Data from Biomedical Literature: Feasibility and Validation.","publication_year":2025,"publication_date":"2025-09-03","ids":{"openalex":"https://openalex.org/W4413970667","doi":"https://doi.org/10.3233/shti251379","pmid":"https://pubmed.ncbi.nlm.nih.gov/40899527"},"language":"en","primary_location":{"id":"pmid:40899527","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40899527","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},"type":"article","indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5119533833","display_name":"Vicky Scholz","orcid":null},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Vicky Scholz","raw_affiliation_strings":["Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119533834","display_name":"Sven Bichtemann","orcid":null},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Bichtemann","raw_affiliation_strings":["Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042665334","display_name":"Oliver J. Bott","orcid":"https://orcid.org/0000-0002-8823-5247"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Johannes Bott","raw_affiliation_strings":["Institute for Applied Data Science Hannover DATA|H, University of Applied Sciences and Arts, Hannover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Applied Data Science Hannover DATA|H, University of Applied Sciences and Arts, Hannover, Germany","institution_ids":["https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071033298","display_name":"Thomas Illig","orcid":"https://orcid.org/0000-0003-4284-5389"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Illig","raw_affiliation_strings":["Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5119533835","display_name":"Sara Haag","orcid":null},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I4210152261","display_name":"Intelligent Transport Systems Niedersachsen","ror":"https://ror.org/05xyrf554","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210152261"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sara Haag","raw_affiliation_strings":["Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover","Translationsallianz in Niedersachsen (TRAIN), Feodor-Lynen-Stra\u00dfe 7, 30625 Hannover"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hannover Unified Biobank (HUB), Medizinische Hochschule Hannover, Carl Neuberg Str.1, 30625 Hannover","institution_ids":["https://openalex.org/I34809795"]},{"raw_affiliation_string":"Translationsallianz in Niedersachsen (TRAIN), Feodor-Lynen-Stra\u00dfe 7, 30625 Hannover","institution_ids":["https://openalex.org/I4210152261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5119533833"],"corresponding_institution_ids":["https://openalex.org/I34809795"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19507785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"331","issue":null,"first_page":"52","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4458000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4458000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.08219999819993973,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.06319999694824219,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5799420475959778},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44625598192214966},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37815743684768677}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5799420475959778},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44625598192214966},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37815743684768677}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":1,"locations":[{"id":"pmid:40899527","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40899527","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"INTRODUCTION:":[0],"The":[1],"quality":[2],"and":[3,26,36,87,97,151],"reproducibility":[4,150],"of":[5,49,58,109],"research":[6],"results":[7],"from":[8,19,62],"biological":[9],"samples":[10],"are":[11],"significantly":[12,124],"influenced":[13],"by":[14],"the":[15,47,55,129,155],"pre-analytical":[16,59],"variability":[17,60],"resulting":[18],"different":[20],"conditions":[21,112],"during":[22],"sample":[23],"collection,":[24],"storage":[25,114],"processing.":[27],"Although":[28],"numerous":[29],"studies":[30],"have":[31],"investigated":[32],"their":[33],"effects,":[34],"standardized":[35,68],"structured":[37,56,98,141],"reporting":[38],"remains":[39],"limited,":[40],"hindering":[41],"systematic":[42],"evaluation.":[43],"This":[44],"study":[45,130],"explores":[46],"potential":[48],"Large":[50],"Language":[51],"Models":[52,80],"(LLMs)":[53],"for":[54,102,139,158],"extraction":[57,126,143],"data":[61,142],"scientific":[63],"literature.":[64],"METHODS:":[65],"Using":[66],"a":[67],"parameter":[69],"catalog,":[70],"various":[71],"LLMs":[72,133],"were":[73],"evaluated":[74],"with":[75],"specially":[76],"designed":[77],"prompts.":[78],"RESULTS:":[79],"such":[81],"as":[82,136],"GPT-4.5,":[83],"o1,":[84],"DeepSeek":[85],"R1,":[86],"o3":[88],"mini":[89],"high":[90],"demonstrated":[91],"promising":[92],"performance":[93],"in":[94,144,149],"contextual":[95,152],"understanding":[96],"output":[99],"generation,":[100],"particularly":[101],"CSV":[103],"files.":[104],"However,":[105],"consistent":[106],"semantic":[107],"mapping":[108],"complex":[110],"experimental":[111],"(e.g.,":[113],"time":[115],"versus":[116],"temperature)":[117],"proved":[118],"challenging.":[119],"CONCLUSION:":[120],"Targeted":[121],"token":[122],"reduction":[123],"improved":[125],"quality.":[127],"Overall,":[128],"shows":[131],"that":[132],"can":[134],"serve":[135],"effective":[137],"tools":[138],"supporting":[140],"biomedical":[145],"contexts-though":[146],"current":[147],"limitations":[148],"fidelity":[153],"highlight":[154],"continued":[156],"need":[157],"expert":[159],"oversight.":[160]},"counts_by_year":[],"updated_date":"2026-04-28T06:04:28.489925","created_date":"2025-10-10T00:00:00"}
