{"id":"https://openalex.org/W4413049950","doi":"https://doi.org/10.3233/shti251202","title":"Usefulness and Challenges in Developing Disease Extraction Algorithms in Japanese Large-Scale Data-Driven Databases","display_name":"Usefulness and Challenges in Developing Disease Extraction Algorithms in Japanese Large-Scale Data-Driven Databases","publication_year":2025,"publication_date":"2025-08-07","ids":{"openalex":"https://openalex.org/W4413049950","doi":"https://doi.org/10.3233/shti251202","pmid":"https://pubmed.ncbi.nlm.nih.gov/40776219"},"language":"en","primary_location":{"id":"doi:10.3233/shti251202","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251202","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti251202","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067817701","display_name":"Naoichi Sato","orcid":"https://orcid.org/0000-0001-8674-8244"},"institutions":[{"id":"https://openalex.org/I4210097767","display_name":"Kyushu University Hospital","ror":"https://ror.org/00ex2fc97","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I135598925","https://openalex.org/I4210097767"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Naoichi Sato","raw_affiliation_strings":["Medical Information Center, Kyushu University Hospital, Fukuoka"],"raw_orcid":"https://orcid.org/0000-0001-8674-8244","affiliations":[{"raw_affiliation_string":"Medical Information Center, Kyushu University Hospital, Fukuoka","institution_ids":["https://openalex.org/I4210097767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077782337","display_name":"Rieko Izukura","orcid":"https://orcid.org/0000-0002-1070-3274"},"institutions":[{"id":"https://openalex.org/I118574687","display_name":"University of Miyazaki","ror":"https://ror.org/0447kww10","country_code":"JP","type":"education","lineage":["https://openalex.org/I118574687"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Rieko Izukura","raw_affiliation_strings":["School of Nursing, Faculty of Medicine, University of Miyazaki, Miyazaki"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Nursing, Faculty of Medicine, University of Miyazaki, Miyazaki","institution_ids":["https://openalex.org/I118574687"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shinichiro Ikeda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097767","display_name":"Kyushu University Hospital","ror":"https://ror.org/00ex2fc97","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I135598925","https://openalex.org/I4210097767"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shinichiro Ikeda","raw_affiliation_strings":["Medical Information Center, Kyushu University Hospital, Fukuoka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Information Center, Kyushu University Hospital, Fukuoka","institution_ids":["https://openalex.org/I4210097767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103211899","display_name":"Takanori Yamashita","orcid":"https://orcid.org/0000-0002-9127-3703"},"institutions":[{"id":"https://openalex.org/I4210097767","display_name":"Kyushu University Hospital","ror":"https://ror.org/00ex2fc97","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I135598925","https://openalex.org/I4210097767"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takanori Yamashita","raw_affiliation_strings":["Medical Information Center, Kyushu University Hospital, Fukuoka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Information Center, Kyushu University Hospital, Fukuoka","institution_ids":["https://openalex.org/I4210097767"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102476895","display_name":"Naoki Nakashima","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210097767","display_name":"Kyushu University Hospital","ror":"https://ror.org/00ex2fc97","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I135598925","https://openalex.org/I4210097767"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Naoki Nakashima","raw_affiliation_strings":["Medical Informatics, Graduate School of Medical Sciences, Kyushu University, Fukuoka","Medical Information Center, Kyushu University Hospital, Fukuoka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics, Graduate School of Medical Sciences, Kyushu University, Fukuoka","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Medical Information Center, Kyushu University Hospital, Fukuoka","institution_ids":["https://openalex.org/I4210097767"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067817701"],"corresponding_institution_ids":["https://openalex.org/I4210097767"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.35780693,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"329","issue":null,"first_page":"1762","last_page":"1763"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9059000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9059000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6437923908233643},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6285398602485657},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6240228414535522},{"id":"https://openalex.org/keywords/agency","display_name":"Agency (philosophy)","score":0.5916599035263062},{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.5508367419242859},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4610862135887146},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.445944219827652},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.43949785828590393},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42213913798332214},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.339027464389801},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.2721785008907318},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2511245608329773},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10569605231285095}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6437923908233643},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6285398602485657},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6240228414535522},{"id":"https://openalex.org/C108170787","wikidata":"https://www.wikidata.org/wiki/Q3951828","display_name":"Agency (philosophy)","level":2,"score":0.5916599035263062},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.5508367419242859},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4610862135887146},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.445944219827652},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.43949785828590393},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42213913798332214},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.339027464389801},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2721785008907318},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2511245608329773},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10569605231285095},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000095225","descriptor_name":"East Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095225","descriptor_name":"East Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095225","descriptor_name":"East Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti251202","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251202","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40776219","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40776219","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:00851:0006994489","is_oa":true,"landing_page_url":"https://miyazaki-u.repo.nii.ac.jp/records/2001843","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.3233/shti251202","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251202","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5600000023841858}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2978999882","https://openalex.org/W3141031773","https://openalex.org/W4411790904","https://openalex.org/W1595686156","https://openalex.org/W2258727049","https://openalex.org/W2181392282","https://openalex.org/W2119369480","https://openalex.org/W148937441","https://openalex.org/W2048777860","https://openalex.org/W2153369162"],"abstract_inverted_index":{"In":[0,76],"the":[1,11,24,29],"electronic":[2],"medical":[3,51,83],"record":[4],"(EHR),":[5],"few":[6],"data":[7],"items":[8],"accurately":[9],"represent":[10],"disease":[12],"pathology":[13],"itself.":[14],"Therefore,":[15,31],"we":[16,32],"need":[17],"algorithms":[18],"to":[19,38,69,87,99,101],"extract":[20],"various":[21],"diseases":[22,41],"with":[23],"highest":[25],"possible":[26],"accuracy":[27],"from":[28,42],"EHR.":[30],"created":[33],"and":[34,60,79,92],"validated":[35],"outcome":[36,104],"definitions":[37],"identify":[39,88],"six":[40],"MID-NET,":[43],"a":[44,72],"Japanese":[45],"large-scale":[46,73],"infrastructure":[47],"database":[48],"of":[49],"Data-driven":[50],"studies":[52],"established":[53],"for":[54,71],"drug":[55],"safety":[56],"by":[57],"PMDA":[58],"(Pharmaceuticals":[59],"Medical":[61],"Devices":[62],"Agency).":[63],"Each":[64],"definition":[65],"was":[66],"practical":[67],"enough":[68],"use":[70],"clinical":[74],"database.":[75],"addition,":[77],"PPVs":[78],"sensitivities":[80],"differed":[81],"between":[82],"facilities,":[84],"allowing":[85],"us":[86],"issues":[89],"in":[90],"creating":[91],"operating":[93],"definitions.":[94,105],"Our":[95],"research":[96],"is":[97],"expected":[98],"contribute":[100],"developing":[102],"transnational":[103]},"counts_by_year":[],"updated_date":"2025-12-28T23:10:05.387466","created_date":"2025-10-10T00:00:00"}
