{"id":"https://openalex.org/W4413050487","doi":"https://doi.org/10.3233/shti251185","title":"Leveraging Large Language Models for Cancer Variant Classification: A Comparative Study of GPT-4o, LLaMA 3, and Qwen 2.5","display_name":"Leveraging Large Language Models for Cancer Variant Classification: A Comparative Study of GPT-4o, LLaMA 3, and Qwen 2.5","publication_year":2025,"publication_date":"2025-08-07","ids":{"openalex":"https://openalex.org/W4413050487","doi":"https://doi.org/10.3233/shti251185","pmid":"https://pubmed.ncbi.nlm.nih.gov/40776202"},"language":"en","primary_location":{"id":"doi:10.3233/shti251185","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251185","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti251185","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110900416","display_name":"Kuan\u2010Hsun Lin","orcid":"https://orcid.org/0009-0002-8058-073X"},"institutions":[{"id":"https://openalex.org/I191969501","display_name":"National Taipei University of Nursing and Health Science","ror":"https://ror.org/019z71f50","country_code":"TW","type":"education","lineage":["https://openalex.org/I191969501"]},{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kuan-Hsun Lin","raw_affiliation_strings":["Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","institution_ids":["https://openalex.org/I191969501"]},{"raw_affiliation_string":"Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","institution_ids":["https://openalex.org/I2803004286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009616936","display_name":"Paul Chih-Hsueh Chen","orcid":"https://orcid.org/0000-0003-2639-0206"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Paul Chih-Hsueh Chen","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","School of Medicine, National Yang Ming Chiao Tung University, 112304, Taipei, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","institution_ids":["https://openalex.org/I2803004286"]},{"raw_affiliation_string":"School of Medicine, National Yang Ming Chiao Tung University, 112304, Taipei, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025346186","display_name":"Chen-Tsung Kuo","orcid":null},"institutions":[{"id":"https://openalex.org/I191969501","display_name":"National Taipei University of Nursing and Health Science","ror":"https://ror.org/019z71f50","country_code":"TW","type":"education","lineage":["https://openalex.org/I191969501"]},{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chen-Tsung Kuo","raw_affiliation_strings":["Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","institution_ids":["https://openalex.org/I191969501"]},{"raw_affiliation_string":"Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","institution_ids":["https://openalex.org/I2803004286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059739856","display_name":"Yuan-Chia Chu","orcid":"https://orcid.org/0000-0002-0997-5168"},"institutions":[{"id":"https://openalex.org/I191969501","display_name":"National Taipei University of Nursing and Health Science","ror":"https://ror.org/019z71f50","country_code":"TW","type":"education","lineage":["https://openalex.org/I191969501"]},{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yuan-Chia Chu","raw_affiliation_strings":["Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei, 11219, Taiwan, R.O.C","institution_ids":["https://openalex.org/I191969501"]},{"raw_affiliation_string":"Department of Information Management, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","institution_ids":["https://openalex.org/I2803004286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026375714","display_name":"Yi\u2010Chen Yeh","orcid":"https://orcid.org/0000-0002-6442-4967"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Chen Yeh","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","School of Medicine, National Yang Ming Chiao Tung University, 112304, Taipei, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Taipei Veterans General Hospital, Taipei, 11267, Taiwan, R.O.C","institution_ids":["https://openalex.org/I2803004286"]},{"raw_affiliation_string":"School of Medicine, National Yang Ming Chiao Tung University, 112304, Taipei, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23444332,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"329","issue":null,"first_page":"1728","last_page":"1729"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9510999917984009,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5831409692764282},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4332078695297241},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.40063783526420593},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3472469747066498},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.321651428937912},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20472177863121033},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.200324147939682},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12365353107452393}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5831409692764282},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4332078695297241},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.40063783526420593},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3472469747066498},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.321651428937912},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20472177863121033},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.200324147939682},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12365353107452393}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti251185","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251185","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40776202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40776202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti251185","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti251185","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3204019825"],"abstract_inverted_index":{"BACKGROUND:":[0],"Interpreting":[1],"genomic":[2,60],"variants":[3],"from":[4],"cancer":[5,51],"sequencing":[6],"data":[7],"is":[8,25],"a":[9],"critical":[10],"yet":[11],"complex":[12],"task":[13],"in":[14,19,28,58],"precision":[15],"oncology.":[16],"With":[17],"advances":[18],"large":[20],"language":[21],"models":[22],"(LLMs),":[23],"there":[24],"increasing":[26],"interest":[27],"leveraging":[29],"their":[30,56],"capacity":[31],"for":[32],"variant":[33,52],"classification.":[34],"This":[35],"study":[36],"benchmarks":[37],"three":[38],"state-of-the-art":[39],"LLMs":[40],"-":[41,48],"GPT-4o,":[42],"LLaMA":[43],"3,":[44],"and":[45],"Qwen":[46],"2.5":[47],"on":[49],"curated":[50],"databases":[53],"to":[54],"assess":[55],"utility":[57],"clinical":[59],"interpretation.":[61]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
