{"id":"https://openalex.org/W4413051847","doi":"https://doi.org/10.3233/shti250951","title":"Efficient Maintenance of Large-Scale Medical Dictionaries Using Large Language Models: A Case for Biomarkers","display_name":"Efficient Maintenance of Large-Scale Medical Dictionaries Using Large Language Models: A Case for Biomarkers","publication_year":2025,"publication_date":"2025-08-07","ids":{"openalex":"https://openalex.org/W4413051847","doi":"https://doi.org/10.3233/shti250951","pmid":"https://pubmed.ncbi.nlm.nih.gov/40775969"},"language":"en","primary_location":{"id":"doi:10.3233/shti250951","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250951","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti250951","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047400029","display_name":"Yuka Otsuki","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuka Otsuki","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":"https://orcid.org/0009-0005-0272-4111","affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005540314","display_name":"Shuntaro Yada","orcid":"https://orcid.org/0000-0002-6209-1054"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shuntaro Yada","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan","University of Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]},{"raw_affiliation_string":"University of Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089162773","display_name":"Tomohiro Nishiyama","orcid":"https://orcid.org/0000-0003-1538-8266"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomohiro Nishiyama","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083962384","display_name":"Toshiyuki Sakurai","orcid":"https://orcid.org/0000-0001-7550-0841"},"institutions":[{"id":"https://openalex.org/I4210125382","display_name":"Federal State Budgetary Scientific Institution Research Institute of Medical Primatology","ror":"https://ror.org/02h2jfy25","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210125382"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Toshiyuki Sakurai","raw_affiliation_strings":["Prime Research Institute for Medical RWD, Inc., Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prime Research Institute for Medical RWD, Inc., Japan","institution_ids":["https://openalex.org/I4210125382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050261001","display_name":"Masafumi OKADA","orcid":"https://orcid.org/0000-0002-7715-5292"},"institutions":[{"id":"https://openalex.org/I4210125382","display_name":"Federal State Budgetary Scientific Institution Research Institute of Medical Primatology","ror":"https://ror.org/02h2jfy25","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210125382"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Masafumi Okada","raw_affiliation_strings":["Prime Research Institute for Medical RWD, Inc., Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prime Research Institute for Medical RWD, Inc., Japan","institution_ids":["https://openalex.org/I4210125382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071606888","display_name":"Noriko Kudo","orcid":"https://orcid.org/0000-0001-7184-8146"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Noriko Kudo","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045601042","display_name":"Kyoko Kawabata","orcid":"https://orcid.org/0000-0002-0950-717X"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kyoko Kawabata","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071225214","display_name":"Takako Fujimaki","orcid":"https://orcid.org/0000-0003-2182-9152"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takako Fujimaki","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102001871","display_name":"Hiroyuki Nagai","orcid":"https://orcid.org/0000-0003-2525-0594"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroyuki Nagai","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046718849","display_name":"Shoko Wakamiya","orcid":"https://orcid.org/0000-0002-9371-1340"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shoko Wakamiya","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041089475","display_name":"Eiji Aramaki","orcid":"https://orcid.org/0000-0003-0201-3609"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Eiji Aramaki","raw_affiliation_strings":["Nara Institute of Science and Technology, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23521215,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"329","issue":null,"first_page":"804","last_page":"808"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12353","display_name":"Lexicography and Language Studies","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7988488674163818},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7621047496795654},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7386585474014282},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5497531890869141},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.46863365173339844},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4489551782608032},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4003216326236725},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39675408601760864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39283260703086853},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33238106966018677},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10762307047843933},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06609854102134705}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7988488674163818},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7621047496795654},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7386585474014282},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5497531890869141},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.46863365173339844},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4489551782608032},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4003216326236725},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39675408601760864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39283260703086853},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33238106966018677},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10762307047843933},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06609854102134705},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti250951","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250951","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40775969","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40775969","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:01146:0006961081","is_oa":true,"landing_page_url":"https://naist.repo.nii.ac.jp/records/2001198","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 20th World Congress on Medical and Health Informatics","raw_type":"conference paper"}],"best_oa_location":{"id":"doi:10.3233/shti250951","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250951","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.8299999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2106424170","https://openalex.org/W1985426483","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2010935248","https://openalex.org/W2768810474"],"abstract_inverted_index":{"Dictionaries":[0],"are":[1,18],"essential":[2],"in":[3,50,67,87],"natural":[4],"language":[5,63],"processing":[6],"and":[7,16],"provide":[8],"significant":[9],"value":[10],"across":[11],"tasks;":[12],"however,":[13],"their":[14],"construction":[15],"maintenance":[17,109],"expensive.":[19],"Leveraging":[20],"manual":[21],"revision":[22],"histories":[23],"to":[24,35],"suggest":[25],"automatic":[26],"corrections":[27],"for":[28,46],"unedited":[29],"terms":[30],"offers":[31],"a":[32,44,51,91],"promising":[33],"solution":[34],"enhance":[36],"quality":[37],"while":[38],"reducing":[39],"costs.":[40],"This":[41,79],"study":[42],"proposes":[43],"method":[45,80],"automatically":[47],"correcting":[48],"metadata":[49],"large-scale":[52],"medical":[53,96],"dictionary":[54,74,108],"containing":[55],"more":[56],"than":[57],"500,000":[58],"terms.":[59],"By":[60],"utilizing":[61],"large":[62],"models":[64],"that":[65,93,101],"excel":[66],"zero-shot":[68],"settings,":[69],"the":[70,73,107],"system":[71],"estimates":[72],"information":[75],"without":[76],"task-specific":[77],"configurations.":[78],"was":[81],"demonstrated":[82],"through":[83],"experiments":[84],"on":[85],"variations":[86],"gene":[88],"biomarker":[89],"expression,":[90],"task":[92],"requires":[94],"specialized":[95],"knowledge.":[97],"The":[98],"results":[99],"indicate":[100],"this":[102],"approach":[103],"can":[104],"significantly":[105],"reduce":[106],"burden.":[110]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
