{"id":"https://openalex.org/W4413040023","doi":"https://doi.org/10.3233/shti250932","title":"A Framework for Extracting, and Validating Named-Entities to Integrate Openehr Using the Example of Free Text Molecular Genetic Findings","display_name":"A Framework for Extracting, and Validating Named-Entities to Integrate Openehr Using the Example of Free Text Molecular Genetic Findings","publication_year":2025,"publication_date":"2025-08-07","ids":{"openalex":"https://openalex.org/W4413040023","doi":"https://doi.org/10.3233/shti250932","pmid":"https://pubmed.ncbi.nlm.nih.gov/40775950"},"language":"en","primary_location":{"id":"doi:10.3233/shti250932","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250932","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti250932","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046265823","display_name":"Nektarios Ladas","orcid":"https://orcid.org/0000-0001-5918-8384"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nektarios Ladas","raw_affiliation_strings":["Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5918-8384","affiliations":[{"raw_affiliation_string":"Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024391853","display_name":"Stefan Franz","orcid":null},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Franz","raw_affiliation_strings":["Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086375436","display_name":"Maximilian Schieck","orcid":"https://orcid.org/0000-0001-5878-0546"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Schieck","raw_affiliation_strings":["Hannover Unified Biobank, Hannover Medical School, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hannover Unified Biobank, Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074328465","display_name":"Alina Rehberg","orcid":null},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alina Rehberg","raw_affiliation_strings":["Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024392920","display_name":"Michael Marschollek","orcid":"https://orcid.org/0000-0002-5921-3073"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Marschollek","raw_affiliation_strings":["Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030870582","display_name":"Matthias Gietzelt","orcid":"https://orcid.org/0000-0002-3796-3367"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Gietzelt","raw_affiliation_strings":["Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.3184,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.91095759,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"329","issue":null,"first_page":"708","last_page":"712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7851340770721436},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7049803733825684},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.5454479455947876},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5121119022369385},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4653874933719635},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42959412932395935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3483012914657593},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1220875084400177}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7851340770721436},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7049803733825684},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.5454479455947876},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5121119022369385},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4653874933719635},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42959412932395935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3483012914657593},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1220875084400177},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti250932","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250932","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40775950","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40775950","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3233/shti250932","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250932","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W4234772502","https://openalex.org/W2380685755","https://openalex.org/W2252100032","https://openalex.org/W2963436428","https://openalex.org/W4400978025","https://openalex.org/W2918743509","https://openalex.org/W2734796617","https://openalex.org/W3083218341","https://openalex.org/W2772772214"],"abstract_inverted_index":{"Processing":[0],"and":[1,48,83],"extracting":[2],"information":[3,29],"from":[4],"unstructured":[5,65],"texts":[6,54,66,97],"written":[7,53,96],"by":[8],"physicians":[9],"in":[10,42,67,86,98,112],"Hospitals":[11],"is":[12,18],"still":[13],"an":[14,113],"open":[15],"problem.":[16],"There":[17],"no":[19],"efficient":[20],"solution":[21],"that":[22,73],"ensures":[23],"the":[24,27,37,43,49,52,57,94,109],"reliability":[25],"of":[26,40,51,108,115],"extracted":[28],"without":[30],"any":[31],"human":[32],"intervention.":[33],"Many":[34],"factors,":[35],"like":[36],"low":[38],"availability":[39],"documents":[41],"training":[44],"phase,":[45],"patient-sensitive":[46],"information,":[47],"complexity":[50],"can":[55],"impact":[56],"results.":[58,105],"Through":[59],"our":[60,104],"scientific":[61],"journey,":[62],"to":[63,79,102],"integrate":[64,84],"openEHR,":[68],"we":[69,92],"have":[70],"developed":[71],"tools":[72],"together":[74],"provide":[75],"a":[76,89],"complete":[77],"process":[78],"efficiently":[80],"extract,":[81],"validate":[82],"data":[85],"openEHR.":[87],"As":[88],"use":[90],"case,":[91],"demonstrate":[93],"free":[95],"molecular":[99],"genetic":[100],"findings":[101],"present":[103],"The":[106],"validation":[107],"pipeline":[110],"resulted":[111],"F-score":[114],"0.98.":[116]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
