{"id":"https://openalex.org/W4410447829","doi":"https://doi.org/10.3233/shti250279","title":"Automatic Segmentation of Histopathological Glioblastoma Whole-Slide Images Utilizing MONAI","display_name":"Automatic Segmentation of Histopathological Glioblastoma Whole-Slide Images Utilizing MONAI","publication_year":2025,"publication_date":"2025-05-15","ids":{"openalex":"https://openalex.org/W4410447829","doi":"https://doi.org/10.3233/shti250279","pmid":"https://pubmed.ncbi.nlm.nih.gov/40380391"},"language":"en","primary_location":{"id":"doi:10.3233/shti250279","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250279","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI250279","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI250279","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Ellena Spiess","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163522","display_name":"Technische Hochschule Ulm","ror":"https://ror.org/05e5kd476","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210163522"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ellena Spiess","raw_affiliation_strings":["Faculty of Computer Science, Ulm University of Applied Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, Ulm University of Applied Sciences","institution_ids":["https://openalex.org/I4210163522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036358389","display_name":"Dominik M\u00fcller","orcid":"https://orcid.org/0000-0003-0838-9885"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]},{"id":"https://openalex.org/I2802007660","display_name":"University Hospital Augsburg","ror":"https://ror.org/03b0k9c14","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802007660"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominik M\u00fcller","raw_affiliation_strings":["Faculty of Applied Computer Science, University of Augsburg","Institute for Digital Medicine, University Hospital Augsburg"],"raw_orcid":"https://orcid.org/0000-0003-0838-9885","affiliations":[{"raw_affiliation_string":"Faculty of Applied Computer Science, University of Augsburg","institution_ids":["https://openalex.org/I179225836"]},{"raw_affiliation_string":"Institute for Digital Medicine, University Hospital Augsburg","institution_ids":["https://openalex.org/I2802007660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056267821","display_name":"Moritz Dinser","orcid":"https://orcid.org/0000-0001-5700-4393"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]},{"id":"https://openalex.org/I4210124377","display_name":"Neu-Ulm University of Applied Sciences","ror":"https://ror.org/03ggzay52","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210124377"]},{"id":"https://openalex.org/I4210126310","display_name":"Universit\u00e4tsklinikum W\u00fcrzburg","ror":"https://ror.org/03pvr2g57","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210126310"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Moritz Dinser","raw_affiliation_strings":["Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg","DigiHealth Institute, Neu-Ulm University of Applied Sciences","Institute of Medical Data Science, University Hospital W\u00fcrzburg"],"raw_orcid":"https://orcid.org/0000-0001-5700-4393","affiliations":[{"raw_affiliation_string":"Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg","institution_ids":["https://openalex.org/I179225836"]},{"raw_affiliation_string":"DigiHealth Institute, Neu-Ulm University of Applied Sciences","institution_ids":["https://openalex.org/I4210124377"]},{"raw_affiliation_string":"Institute of Medical Data Science, University Hospital W\u00fcrzburg","institution_ids":["https://openalex.org/I4210126310"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001486980","display_name":"Volker Herbort","orcid":"https://orcid.org/0009-0004-3733-0879"},"institutions":[{"id":"https://openalex.org/I4210163522","display_name":"Technische Hochschule Ulm","ror":"https://ror.org/05e5kd476","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210163522"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Volker Herbort","raw_affiliation_strings":["Faculty of Computer Science, Ulm University of Applied Sciences"],"raw_orcid":"https://orcid.org/0009-0004-3733-0879","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, Ulm University of Applied Sciences","institution_ids":["https://openalex.org/I4210163522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071135585","display_name":"Friederike Liesche\u2010Starnecker","orcid":"https://orcid.org/0000-0003-1948-1580"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Friederike Liesche-Starnecker","raw_affiliation_strings":["Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg"],"raw_orcid":"https://orcid.org/0000-0003-1948-1580","affiliations":[{"raw_affiliation_string":"Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019200935","display_name":"Johannes Schobel","orcid":"https://orcid.org/0000-0002-6874-9478"},"institutions":[{"id":"https://openalex.org/I4210124377","display_name":"Neu-Ulm University of Applied Sciences","ror":"https://ror.org/03ggzay52","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210124377"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Schobel","raw_affiliation_strings":["DigiHealth Institute, Neu-Ulm University of Applied Sciences"],"raw_orcid":"https://orcid.org/0000-0002-6874-9478","affiliations":[{"raw_affiliation_string":"DigiHealth Institute, Neu-Ulm University of Applied Sciences","institution_ids":["https://openalex.org/I4210124377"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103193466","display_name":"Daniel Hieber","orcid":"https://orcid.org/0000-0002-6278-8759"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]},{"id":"https://openalex.org/I4210124377","display_name":"Neu-Ulm University of Applied Sciences","ror":"https://ror.org/03ggzay52","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210124377"]},{"id":"https://openalex.org/I4210126310","display_name":"Universit\u00e4tsklinikum W\u00fcrzburg","ror":"https://ror.org/03pvr2g57","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210126310"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Hieber","raw_affiliation_strings":["Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg","DigiHealth Institute, Neu-Ulm University of Applied Sciences","Institute of Medical Data Science, University Hospital W\u00fcrzburg"],"raw_orcid":"https://orcid.org/0000-0002-6278-8759","affiliations":[{"raw_affiliation_string":"Department of Neuropathology, Pathology, Medical Faculty, University of Augsburg","institution_ids":["https://openalex.org/I179225836"]},{"raw_affiliation_string":"DigiHealth Institute, Neu-Ulm University of Applied Sciences","institution_ids":["https://openalex.org/I4210124377"]},{"raw_affiliation_string":"Institute of Medical Data Science, University Hospital W\u00fcrzburg","institution_ids":["https://openalex.org/I4210126310"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.9898,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.96796541,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"327","issue":null,"first_page":"88","last_page":"92"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7389758229255676},{"id":"https://openalex.org/keywords/glioblastoma","display_name":"Glioblastoma","score":0.6922528147697449},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6814218759536743},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.6450358629226685},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6385989189147949},{"id":"https://openalex.org/keywords/h-e-stain","display_name":"H&E stain","score":0.497022420167923},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.42040741443634033},{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.4183942675590515},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36854973435401917},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.34262630343437195},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32033485174179077},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.27168402075767517},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19527080655097961}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7389758229255676},{"id":"https://openalex.org/C2776194525","wikidata":"https://www.wikidata.org/wiki/Q282142","display_name":"Glioblastoma","level":2,"score":0.6922528147697449},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6814218759536743},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.6450358629226685},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6385989189147949},{"id":"https://openalex.org/C125473707","wikidata":"https://www.wikidata.org/wiki/Q9914","display_name":"H&E stain","level":3,"score":0.497022420167923},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.42040741443634033},{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.4183942675590515},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36854973435401917},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.34262630343437195},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32033485174179077},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.27168402075767517},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19527080655097961},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001932","descriptor_name":"Brain Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001932","descriptor_name":"Brain Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti250279","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250279","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI250279","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:40380391","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40380391","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3233/shti250279","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti250279","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI250279","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410447829.pdf","grobid_xml":"https://content.openalex.org/works/W4410447829.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3104750253","https://openalex.org/W3021239166","https://openalex.org/W2586273397","https://openalex.org/W2390936256","https://openalex.org/W2016385589","https://openalex.org/W2009559548","https://openalex.org/W2483429559","https://openalex.org/W2890643743","https://openalex.org/W4366341510","https://openalex.org/W2906397153"],"abstract_inverted_index":{"Manual":[0],"segmentation":[1],"of":[2,33,91],"histopathological":[3],"images":[4],"is":[5],"both":[6],"resource-intensive":[7],"and":[8,25,71],"prone":[9],"to":[10,39,47,65,79],"human":[11],"error,":[12],"particularly":[13],"when":[14],"dealing":[15],"with":[16,43],"challenging":[17],"tumor":[18],"types":[19],"like":[20],"Glioblastoma":[21],"(GBM),":[22],"an":[23],"aggressive":[24],"highly":[26],"heterogeneous":[27],"brain":[28],"tumor.":[29],"The":[30],"fuzzy":[31],"borders":[32],"GBM":[34,67],"make":[35],"it":[36],"especially":[37],"difficult":[38],"segment,":[40],"requiring":[41],"models":[42],"strong":[44],"generalization":[45],"capabilities":[46],"achieve":[48],"reliable":[49],"results.":[50],"In":[51],"this":[52],"study,":[53],"we":[54],"leverage":[55],"the":[56,97],"Medical":[57],"Open":[58],"Network":[59],"for":[60,99],"Artificial":[61],"Intelligence":[62],"(MONAI)":[63],"framework":[64],"segment":[66],"tissue":[68],"from":[69],"hematoxylin":[70],"eosin-stained":[72],"Whole-Slide":[73],"Images.":[74],"MONAI":[75],"performed":[76],"comparably":[77],"well":[78],"state-of-the-art":[80],"AutoML":[81],"tools":[82],"on":[83,102],"our":[84],"in-house":[85],"dataset,":[86],"achieving":[87],"a":[88],"Dice":[89],"score":[90],"79%.":[92],"These":[93],"promising":[94],"results":[95],"highlight":[96],"potential":[98],"future":[100],"research":[101],"public":[103],"datasets.":[104]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
