{"id":"https://openalex.org/W4404611768","doi":"https://doi.org/10.3233/shti241077","title":"Clinical Informatics Foundations of 57 Years Sentinel and Genomic Surveillance: Data Quality, Linkage and Access","display_name":"Clinical Informatics Foundations of 57 Years Sentinel and Genomic Surveillance: Data Quality, Linkage and Access","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4404611768","doi":"https://doi.org/10.3233/shti241077","pmid":"https://pubmed.ncbi.nlm.nih.gov/39575794"},"language":"en","primary_location":{"id":"doi:10.3233/shti241077","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti241077","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI241077","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI241077","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006687609","display_name":"Simon de Lusignan","orcid":"https://orcid.org/0000-0002-8553-2641"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Simon de Lusignan","raw_affiliation_strings":["Nuffield Department of Primary Care Health Sciences, University of Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Nuffield Department of Primary Care Health Sciences, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052532012","display_name":"Mark Joy","orcid":"https://orcid.org/0000-0002-4974-3724"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Joy","raw_affiliation_strings":["Nuffield Department of Primary Care Health Sciences, University of Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Nuffield Department of Primary Care Health Sciences, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055194670","display_name":"Maria Zambon","orcid":"https://orcid.org/0000-0002-8897-7881"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4387153084","display_name":"UK Health Security Agency","ror":"https://ror.org/018h10037","country_code":null,"type":"government","lineage":["https://openalex.org/I1311074006","https://openalex.org/I4387153084"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Zambon","raw_affiliation_strings":["UK Health Security Agency, Colindale, London, UK","Nuffield Department of Primary Care Health Sciences, University of Oxford, UK"],"affiliations":[{"raw_affiliation_string":"UK Health Security Agency, Colindale, London, UK","institution_ids":["https://openalex.org/I4387153084"]},{"raw_affiliation_string":"Nuffield Department of Primary Care Health Sciences, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006687609"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.32408983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"321","issue":null,"first_page":"129","last_page":"133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.6688895225524902},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.588614821434021},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5185316205024719},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4962366223335266},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.46056586503982544},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45295748114585876},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3308205008506775},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30933046340942383},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1743103265762329},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12488117814064026},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12141495943069458},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11517098546028137},{"id":"https://openalex.org/keywords/operations-management","display_name":"Operations management","score":0.092734694480896},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07293400168418884}],"concepts":[{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.6688895225524902},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.588614821434021},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5185316205024719},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4962366223335266},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.46056586503982544},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45295748114585876},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3308205008506775},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30933046340942383},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1743103265762329},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12488117814064026},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12141495943069458},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11517098546028137},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.092734694480896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07293400168418884},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018571","descriptor_name":"Sentinel Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018571","descriptor_name":"Sentinel Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018571","descriptor_name":"Sentinel Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018571","descriptor_name":"Sentinel Surveillance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti241077","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti241077","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI241077","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:39575794","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39575794","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti241077","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti241077","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI241077","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8399999737739563}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404611768.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1486552319","https://openalex.org/W1955020214","https://openalex.org/W1993933673","https://openalex.org/W2142283217","https://openalex.org/W2757025413","https://openalex.org/W3113755814","https://openalex.org/W3153858974","https://openalex.org/W4205505191","https://openalex.org/W4283739795","https://openalex.org/W4312182367","https://openalex.org/W4383315042","https://openalex.org/W4390957996","https://openalex.org/W4391028379","https://openalex.org/W4396836414"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"Sentinel":[0],"surveillance":[1,126,211],"networks":[2],"are":[3,32],"sophisticated":[4,147],"health":[5,29],"information":[6,41],"systems":[7],"that":[8],"warn":[9],"about":[10,201],"outbreaks":[11],"and":[12,26,42,56,97,192,197,209,217,231],"spread":[13],"of":[14,24,51,62,70,76,109,121,125,149,222],"infectious":[15],"diseases":[16],"with":[17,79,115,144,159],"epidemic":[18],"or":[19,228],"pandemic":[20],"potential,":[21],"the":[22,74,138,150,160,169,174,206,212],"effectiveness":[23],"countermeasures":[25,230],"pressures":[27],"on":[28,82,163],"systems.":[30],"They":[31],"underpinned":[33],"by":[34,173],"their":[35],"ability":[36],"to":[37,72,226,235],"turn":[38],"data":[39,101,185,199,215],"into":[40],"knowledge":[43],"in":[44,118,127],"a":[45,80],"timely":[46],"way.":[47],"The":[48,85,99,123],"Royal":[49],"College":[50],"General":[52],"Practitioners":[53],"(RCGP)":[54],"Research":[55],"Surveillance":[57],"Centre":[58],"(RSC)":[59],"is":[60],"one":[61],"Europe's":[63],"oldest.":[64],"We":[65],"report":[66],"its":[67,119,135],"progressive":[68],"use":[69],"technology":[71],"improve":[73],"scope":[75,124],"sentinel":[77],"surveillance,":[78],"focus":[81],"genomic":[83,210],"surveillance.":[84],"technologies":[86],"include":[87],"terminologies,":[88],"phenotypes,":[89],"compute":[90],"capability,":[91],"virology":[92,141,204],"including":[93],"virial":[94],"genome":[95],"sequencing,":[96],"serology.":[98],"RSC's":[100],"collection":[102],"developed":[103],"from":[104],"partial,":[105],"then":[106],"full":[107],"extraction":[108],"computerised":[110],"medical":[111],"record":[112],"(CMR)":[113],"data.":[114],"increasing":[116],"sophistication":[117],"creation":[120],"phenotypes.":[122],"1967":[128],"was":[129,134,157],"clinical":[130],"diagnosis,":[131],"influenza-like-illness":[132],"(ILI)":[133],"focus.":[136],"In":[137],"1992-1993":[139],"winter":[140],"sampling":[142],"started,":[143],"progressively":[145],"more":[146],"sequencing":[148,156],"viral":[151,155],"genome.":[152],"From":[153],"2008":[154],"comprehensive":[158],"Global":[161],"Initiative":[162],"Sharing":[164],"All":[165],"Influenza":[166],"Data":[167],"(GISAID)":[168],"primary":[170,183],"repository,":[171],"supplemented":[172],"COVID-19":[175],"Genomics":[176],"UK":[177],"(COG-UK)":[178],"consortium":[179],"in-pandemic.":[180],"High":[181],"quality":[182],"care":[184],"captures":[186],"sociodemographic":[187],"features,":[188],"risk":[189],"group":[190],"status,":[191],"vaccine":[193],"exposure;":[194],"linked":[195],"hospital":[196],"death":[198],"informs":[200],"severe":[202],"outcomes;":[203],"identified":[205],"causative":[207],"organism":[208],"variant.":[213],"Timely":[214],"access":[216],"analysis":[218],"will":[219],"enable":[220,232],"identification":[221],"new":[223,233],"variants":[224],"resistant":[225],"vaccination":[227],"other":[229],"interventions":[234],"be":[236],"developed.":[237]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
