{"id":"https://openalex.org/W4402279278","doi":"https://doi.org/10.3233/shti240861","title":"Zero-Shot LLMs for Named Entity Recognition: Targeting Cardiac Function Indicators in German Clinical Texts","display_name":"Zero-Shot LLMs for Named Entity Recognition: Targeting Cardiac Function Indicators in German Clinical Texts","publication_year":2024,"publication_date":"2024-08-30","ids":{"openalex":"https://openalex.org/W4402279278","doi":"https://doi.org/10.3233/shti240861","pmid":"https://pubmed.ncbi.nlm.nih.gov/39234726"},"language":"en","primary_location":{"id":"doi:10.3233/shti240861","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240861","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti240861","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073207479","display_name":"Lucas Plagwitz","orcid":"https://orcid.org/0000-0001-7626-8853"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lucas Plagwitz","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","Interdisciplinary Center for Clinical Research (IZKF), University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7626-8853","affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Interdisciplinary Center for Clinical Research (IZKF), University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017710000","display_name":"Philipp Neuhaus","orcid":"https://orcid.org/0000-0003-1028-2884"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Neuhaus","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115028372","display_name":"Kemal Yildirim","orcid":"https://orcid.org/0009-0009-2129-0952"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kemal Yildirim","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107018887","display_name":"Noah Losch","orcid":null},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Noah Losch","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033176798","display_name":"Julian Varghese","orcid":"https://orcid.org/0000-0002-7206-3719"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Varghese","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080526628","display_name":"Antonius B\u00fcscher","orcid":"https://orcid.org/0000-0003-1774-4252"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Antonius B\u00fcscher","raw_affiliation_strings":["Department for Cardiology II-Electrophysiology, University Hospital M\u00fcnster, M\u00fcnster, Germany","Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","Interdisciplinary Center for Clinical Research (IZKF), University of M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department for Cardiology II-Electrophysiology, University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]},{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Interdisciplinary Center for Clinical Research (IZKF), University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4589,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85185185,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"317","issue":null,"first_page":"228","last_page":"234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7491999864578247,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7491999864578247,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.11389999836683273,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.04830000177025795,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/german","display_name":"German","score":0.8662909269332886},{"id":"https://openalex.org/keywords/shot","display_name":"Shot (pellet)","score":0.48365628719329834},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4826005697250366},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4384865164756775},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4254646599292755},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37320053577423096},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3680041432380676},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36537599563598633},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.24423536658287048}],"concepts":[{"id":"https://openalex.org/C154775046","wikidata":"https://www.wikidata.org/wiki/Q188","display_name":"German","level":2,"score":0.8662909269332886},{"id":"https://openalex.org/C2778344882","wikidata":"https://www.wikidata.org/wiki/Q278938","display_name":"Shot (pellet)","level":2,"score":0.48365628719329834},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4826005697250366},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4384865164756775},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4254646599292755},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37320053577423096},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3680041432380676},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36537599563598633},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.24423536658287048},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti240861","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240861","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:39234726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39234726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti240861","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240861","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2315527029","https://openalex.org/W2074502265","https://openalex.org/W2361861616","https://openalex.org/W4214877189","https://openalex.org/W2065387230","https://openalex.org/W2323937687","https://openalex.org/W2263699433","https://openalex.org/W2773965352","https://openalex.org/W2377979023","https://openalex.org/W648995381"],"abstract_inverted_index":{"INTRODUCTION:":[0],"Large":[1],"Language":[2],"Models":[3],"(LLMs)":[4],"like":[5,33],"ChatGPT":[6],"have":[7],"become":[8],"increasingly":[9],"prevalent.":[10],"In":[11],"medicine,":[12],"many":[13],"potential":[14],"areas":[15],"arise":[16],"where":[17],"LLMs":[18,69,184],"may":[19],"offer":[20],"added":[21],"value.":[22],"Our":[23,115],"research":[24,58],"focuses":[25],"on":[26,50,80],"the":[27,65,120,161,174],"use":[28],"of":[29,67,122,132],"open-source":[30,68,183],"LLM":[31],"alternatives":[32],"Llama":[34,123],"3,":[35,124],"Gemma,":[36,125],"Mistral,":[37,126],"and":[38,97,103,127,135,153,173,201],"Mixtral":[39,128],"to":[40,53,149,197],"extract":[41],"medical":[42,72,187],"parameters":[43,73,188],"from":[44,74,84,105,189],"German":[45,51,75,175],"clinical":[46,76,190],"texts.":[47],"We":[48,89],"concentrate":[49],"due":[52,196],"an":[54],"observed":[55],"gap":[56],"in":[57,70,130,194],"for":[59,170,185],"non-English":[60],"tasks.":[61],"OBJECTIVE:":[62],"To":[63],"evaluate":[64],"effectiveness":[66,202],"extracting":[71,186],"texts,":[77,191],"specially":[78],"focusing":[79],"cardiovascular":[81,92],"function":[82,93],"indicators":[83],"cardiac":[85,109],"MRI":[86],"reports.":[87,114],"METHODS:":[88],"extracted":[90],"14":[91],"indicators,":[94],"including":[95,192],"left":[96],"right":[98,133,151],"ventricular":[99],"ejection":[100],"fraction":[101],"(LV-EF":[102],"RV-EF),":[104],"497":[106],"variously":[107],"formulated":[108],"magnetic":[110],"resonance":[111],"imaging":[112],"(MRI)":[113],"systematic":[116],"analysis":[117,143],"involved":[118],"assessing":[119],"performance":[121,146],"models":[129,165],"terms":[131],"annotation":[134,152],"named":[136],"entity":[137],"recognition":[138],"(NER)":[139],"accuracy.":[140],"RESULTS:":[141],"The":[142,178],"confirms":[144],"strong":[145],"with":[147],"up":[148],"95.4%":[150],"99.8%":[154],"NER":[155],"accuracy":[156,200],"across":[157],"different":[158],"architectures,":[159],"despite":[160],"fact":[162],"that":[163],"these":[164],"were":[166],"not":[167],"explicitly":[168],"fine-tuned":[169],"data":[171],"extraction":[172],"language.":[176],"CONCLUSION:":[177],"results":[179],"strongly":[180],"recommend":[181],"using":[182],"those":[193],"German,":[195],"their":[198],"high":[199],"even":[203],"without":[204],"specific":[205],"fine-tuning.":[206]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
