{"id":"https://openalex.org/W4401822410","doi":"https://doi.org/10.3233/shti240580","title":"What Kind of Transformer Models to Use for the ICD-10 Codes Classification Task","display_name":"What Kind of Transformer Models to Use for the ICD-10 Codes Classification Task","publication_year":2024,"publication_date":"2024-08-22","ids":{"openalex":"https://openalex.org/W4401822410","doi":"https://doi.org/10.3233/shti240580","pmid":"https://pubmed.ncbi.nlm.nih.gov/39176961"},"language":"en","primary_location":{"id":"doi:10.3233/shti240580","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240580","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240580","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240580","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111299328","display_name":"Mariem Mansour","orcid":null},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mariem Mansour","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113958068","display_name":"Fatma Gizem Karao\u011flan Y\u0131lmaz","orcid":"https://orcid.org/0009-0008-2626-6989"},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fatma Yilmaz","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086979438","display_name":"Marko Miletic","orcid":null},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marko Miletic","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102842494","display_name":"Murat Sariyar","orcid":"https://orcid.org/0000-0003-3432-2860"},"institutions":[{"id":"https://openalex.org/I130692619","display_name":"Bern University of Applied Sciences","ror":"https://ror.org/02bnkt322","country_code":"CH","type":"education","lineage":["https://openalex.org/I130692619"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Murat Sariyar","raw_affiliation_strings":["Bern University of Applied Sciences, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-3432-2860","affiliations":[{"raw_affiliation_string":"Bern University of Applied Sciences, Switzerland","institution_ids":["https://openalex.org/I130692619"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102842494"],"corresponding_institution_ids":["https://openalex.org/I130692619"],"apc_list":null,"apc_paid":null,"fwci":3.5538,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.94218501,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"316","issue":null,"first_page":"1008","last_page":"1012"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14400","display_name":"Medical Coding and Health Information","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T14400","display_name":"Medical Coding and Health Information","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.780124306678772},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7567297220230103},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.7527173757553101},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.657296359539032},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5554959774017334},{"id":"https://openalex.org/keywords/medical-classification","display_name":"Medical classification","score":0.4957471787929535},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4904133975505829},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.47883298993110657},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44618409872055054},{"id":"https://openalex.org/keywords/icd-10","display_name":"ICD-10","score":0.4375765919685364},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4346494674682617},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37348949909210205},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11976802349090576},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09692990779876709}],"concepts":[{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.780124306678772},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7567297220230103},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.7527173757553101},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.657296359539032},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5554959774017334},{"id":"https://openalex.org/C154874363","wikidata":"https://www.wikidata.org/wiki/Q3518464","display_name":"Medical classification","level":2,"score":0.4957471787929535},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4904133975505829},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.47883298993110657},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44618409872055054},{"id":"https://openalex.org/C2781116378","wikidata":"https://www.wikidata.org/wiki/Q45127","display_name":"ICD-10","level":2,"score":0.4375765919685364},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4346494674682617},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37348949909210205},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11976802349090576},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09692990779876709},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D038801","descriptor_name":"International Classification of Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D038801","descriptor_name":"International Classification of Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D038801","descriptor_name":"International Classification of Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D038801","descriptor_name":"International Classification of Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti240580","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240580","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240580","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:39176961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39176961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti240580","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti240580","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI240580","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401822410.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2937845937","https://openalex.org/W3168867926","https://openalex.org/W3198282417","https://openalex.org/W3213321795","https://openalex.org/W4221143384","https://openalex.org/W4283733789","https://openalex.org/W4313439128","https://openalex.org/W4384613937","https://openalex.org/W4386505553","https://openalex.org/W4390141881"],"related_works":["https://openalex.org/W2989490741","https://openalex.org/W3092506759","https://openalex.org/W2367545121","https://openalex.org/W4248881655","https://openalex.org/W2482165163","https://openalex.org/W3010890513","https://openalex.org/W120741642","https://openalex.org/W138569904","https://openalex.org/W2390914021","https://openalex.org/W2389417819"],"abstract_inverted_index":{"Coding":[0],"according":[1],"to":[2,102],"the":[3,26,42,65,95,116],"International":[4],"Classification":[5],"of":[6,28,44,79],"Diseases":[7],"(ICD)-10":[8],"and":[9,17,53,90,114,122],"its":[10],"clinical":[11,61],"modifications":[12],"(CM)":[13],"is":[14,58,125],"inherently":[15],"complex":[16],"expensive.":[18],"Natural":[19],"Language":[20],"Processing":[21],"(NLP)":[22],"assists":[23],"by":[24],"simplifying":[25],"analysis":[27,57],"unstructured":[29],"data":[30],"from":[31,64],"electronic":[32,80],"health":[33,81],"records,":[34],"thereby":[35],"facilitating":[36],"diagnosis":[37],"coding.":[38],"This":[39],"study":[40],"investigates":[41],"suitability":[43],"transformer":[45],"models":[46,84,124],"for":[47,69,94],"ICD-10":[48],"classification,":[49],"considering":[50],"both":[51],"encoder":[52,121],"encoder-decoder":[54,123],"architectures.":[55],"The":[56,105],"performed":[59],"on":[60],"discharge":[62],"summaries":[63],"Medical":[66],"Information":[67],"Mart":[68],"Intensive":[70],"Care":[71],"(MIMIC)-IV":[72],"dataset,":[73],"which":[74],"contains":[75],"an":[76],"extensive":[77],"collection":[78],"records.":[82],"Pre-trained":[83],"such":[85],"as":[86],"BioBERT,":[87],"ClinicalBERT,":[88],"ClinicalLongformer,":[89],"ClinicalBigBird":[91],"are":[92],"adapted":[93],"coding":[96],"task,":[97],"incorporating":[98],"specific":[99],"preprocessing":[100],"techniques":[101],"enhance":[103],"performance.":[104],"findings":[106],"indicate":[107],"that":[108,115],"increasing":[109],"context":[110],"length":[111],"improves":[112],"accuracy,":[113],"difference":[117],"in":[118],"accuracy":[119],"between":[120],"negligible.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
