{"id":"https://openalex.org/W4391224080","doi":"https://doi.org/10.3233/shti231122","title":"A Text Mining Approach to Explore IFN\u03b5 Literature and Biological Mechanisms","display_name":"A Text Mining Approach to Explore IFN\u03b5 Literature and Biological Mechanisms","publication_year":2024,"publication_date":"2024-01-25","ids":{"openalex":"https://openalex.org/W4391224080","doi":"https://doi.org/10.3233/shti231122","pmid":"https://pubmed.ncbi.nlm.nih.gov/38269972"},"language":"en","primary_location":{"id":"doi:10.3233/shti231122","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231122","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231122","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231122","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056300012","display_name":"Mary McCabe","orcid":"https://orcid.org/0000-0002-9307-5399"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mary McCabe","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-9307-5399","affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068423549","display_name":"Helen Groves","orcid":"https://orcid.org/0000-0001-9244-9961"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Helen E. Groves","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042537374","display_name":"Ultan F. Power","orcid":"https://orcid.org/0000-0003-3246-3774"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ultan F. Power","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001595112","display_name":"Guillermo L\u00f3pez\u2013Campos","orcid":"https://orcid.org/0000-0003-3011-0940"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guillermo Lopez Campos","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Belfast, United Kingdom","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.312,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.71624073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"310","issue":null,"first_page":"1036","last_page":"1040"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11503","display_name":"Cytokine Signaling Pathways and Interactions","score":0.9729999899864197,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6616312861442566},{"id":"https://openalex.org/keywords/first-line","display_name":"First line","score":0.5247074365615845},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5157480835914612},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5092085599899292},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.441394567489624},{"id":"https://openalex.org/keywords/interferon","display_name":"Interferon","score":0.41490140557289124},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35483860969543457},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3540744185447693},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3481021821498871},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2822180390357971},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.22443851828575134},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20991426706314087},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11790984869003296}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6616312861442566},{"id":"https://openalex.org/C2993493390","wikidata":"https://www.wikidata.org/wiki/Q5453208","display_name":"First line","level":2,"score":0.5247074365615845},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5157480835914612},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5092085599899292},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.441394567489624},{"id":"https://openalex.org/C2776178377","wikidata":"https://www.wikidata.org/wiki/Q188269","display_name":"Interferon","level":2,"score":0.41490140557289124},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35483860969543457},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3540744185447693},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3481021821498871},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2822180390357971},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.22443851828575134},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20991426706314087},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11790984869003296},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti231122","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231122","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231122","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:38269972","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38269972","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/8ce43e1a-55c1-443a-a220-af07e8150aa6","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/8ce43e1a-55c1-443a-a220-af07e8150aa6","pdf_url":"https://pure.qub.ac.uk/files/553780318/SHTI-310-SHTI231122.pdf","source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"McCabe , M , Groves , H E , Power , U F &amp; Lopez Campos , G 2024 , A text mining approach to explore IFN\u03b5 literature and biological mechanisms . in J Bichel-Findlay , P Otero , P Scott &amp; E Huesing (eds) , MEDINFO 2023 \u2014 The Future Is Accessible . Studies in Health Technology and Informatics , vol. 310 , IOS Press , pp. 1036-1040 . https://doi.org/10.3233/SHTI231122","raw_type":"bookPart"}],"best_oa_location":{"id":"doi:10.3233/shti231122","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231122","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231122","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391224080.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2004829503","https://openalex.org/W2049107599","https://openalex.org/W2061546617","https://openalex.org/W2107368843","https://openalex.org/W2150220236","https://openalex.org/W2161793142","https://openalex.org/W2936804536","https://openalex.org/W2944545583","https://openalex.org/W2979411718","https://openalex.org/W3105753785","https://openalex.org/W4286203294","https://openalex.org/W4289205494"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W4361305867"],"abstract_inverted_index":{"Interferons":[0],"(IFN)":[1],"constitute":[2],"a":[3,20,69,81,111],"primary":[4],"line":[5],"of":[6,24,27,41,74,84,97,107,113,121,125,133,139],"protection":[7],"against":[8],"mucosal":[9],"infection,":[10],"with":[11,80],"IFN":[12,59],"research":[13,37,109],"spanning":[14],"over":[15],"60":[16],"years":[17],"and":[18,47,88,110,136],"encompassing":[19],"vast":[21],"ever-expanding":[22],"amount":[23],"literature.":[25],"Most":[26],"what":[28],"is":[29,51],"currently":[30],"understood":[31],"has":[32],"been":[33],"derived":[34],"from":[35,101],"extensive":[36],"defining":[38],"the":[39,102,119,131,137],"roles":[40],"\"classical\"":[42],"type":[43,86,89],"I":[44,87],"IFNs,":[45],"IFN\u03b1":[46],"IFN\u03b2.":[48],"However,":[49],"little":[50],"known":[52],"regarding":[53],"responses":[54],"elicited":[55],"by":[56],"less":[57],"well-characterized":[58],"subtypes":[60],"such":[61],"as":[62],"IFN\u03b5.":[63,122,143],"In":[64],"this":[65],"paper,":[66],"we":[67],"combined":[68],"deductive":[70],"text":[71],"mining":[72],"analysis":[73,83],"IFN\u03b5":[75,108],"literature":[76,103],"characterizing":[77],"literature-derived":[78],"knowledge":[79,141],"comparative":[82],"other":[85],"III":[90],"IFNs.":[91],"Utilizing":[92],"these":[93,126],"approaches,":[94],"three":[95],"clusters":[96],"terms":[98],"were":[99],"extracted":[100],"covering":[104],"different":[105],"aspects":[106],"set":[112],"47":[114],"genes":[115],"uniquely":[116],"cited":[117],"in":[118],"context":[120],"The":[123],"use":[124],"\"in":[127],"silico\"":[128],"approaches":[129],"support":[130],"expansion":[132],"current":[134],"understanding":[135],"creation":[138],"new":[140],"surrounding":[142]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
