{"id":"https://openalex.org/W4391224060","doi":"https://doi.org/10.3233/shti231118","title":"Architecture of the Mass Spectrometry Data Management Pipeline in the SMART-CARE Project","display_name":"Architecture of the Mass Spectrometry Data Management Pipeline in the SMART-CARE Project","publication_year":2024,"publication_date":"2024-01-25","ids":{"openalex":"https://openalex.org/W4391224060","doi":"https://doi.org/10.3233/shti231118","pmid":"https://pubmed.ncbi.nlm.nih.gov/38269968"},"language":"en","primary_location":{"id":"doi:10.3233/shti231118","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231118","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231118","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231118","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034620612","display_name":"Friedemann Ringwald","orcid":"https://orcid.org/0000-0002-0572-4820"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Friedemann G. Ringwald","raw_affiliation_strings":["Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0572-4820","affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049837225","display_name":"Aleksei Dudchenko","orcid":"https://orcid.org/0000-0002-4717-2307"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Aleksei Dudchenko","raw_affiliation_strings":["Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany","Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070748953","display_name":"Petra Knaup","orcid":"https://orcid.org/0000-0002-1104-0628"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Petra Knaup","raw_affiliation_strings":["Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088382605","display_name":"Felix Czernilofsky","orcid":"https://orcid.org/0000-0001-5868-2890"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Felix Czernilofsky","raw_affiliation_strings":["Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058238162","display_name":"Sascha Dietrich","orcid":"https://orcid.org/0000-0002-0648-1832"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210089242","display_name":"D\u00fcsseldorf University Hospital","ror":"https://ror.org/006k2kk72","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210089242"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sascha Dietrich","raw_affiliation_strings":["Department of Hematology and Oncology, University Hospital D\u00fcsseldorf, D\u00fcsseldorf, Germany","Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Hematology and Oncology, University Hospital D\u00fcsseldorf, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I4210089242","https://openalex.org/I44260953"]},{"raw_affiliation_string":"Department of Medicine V, Hematology, Oncology and Rheumatology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058906885","display_name":"Matthias Ganzinger","orcid":"https://orcid.org/0000-0002-2716-5425"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Ganzinger","raw_affiliation_strings":["Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Heidelberg University Hospital, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5034620612"],"corresponding_institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02053433,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"310","issue":null,"first_page":"1016","last_page":"1020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7310133576393127},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6404443979263306},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5934951305389404},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5827196836471558},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5420719981193542},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.44676271080970764},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.44639667868614197},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.43320879340171814},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.420513391494751},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.41426628828048706},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37608322501182556},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3335954546928406},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3216823935508728},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.283827543258667},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11248207092285156}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7310133576393127},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6404443979263306},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5934951305389404},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5827196836471558},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5420719981193542},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.44676271080970764},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.44639667868614197},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.43320879340171814},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.420513391494751},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.41426628828048706},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37608322501182556},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3335954546928406},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3216823935508728},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.283827543258667},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11248207092285156},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064790","descriptor_name":"Clinical Laboratory Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064790","descriptor_name":"Clinical Laboratory Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064790","descriptor_name":"Clinical Laboratory Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti231118","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231118","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231118","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:38269968","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38269968","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti231118","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231118","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231118","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"},{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391224060.pdf"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2038654336","https://openalex.org/W2122344857","https://openalex.org/W2898123757","https://openalex.org/W3164437314","https://openalex.org/W4281561925"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W3037018281","https://openalex.org/W2972592048","https://openalex.org/W2358319515","https://openalex.org/W4321854979","https://openalex.org/W2003209439","https://openalex.org/W2497626292","https://openalex.org/W2972511296","https://openalex.org/W3083218341","https://openalex.org/W3104375528"],"abstract_inverted_index":{"In":[0],"the":[1,48,112],"SMART-CARE":[2],"project-":[3],"a":[4,17,104],"systems":[5,115],"medicine":[6,116],"approach":[7],"to":[8,98],"stratification":[9],"of":[10,24,114],"cancer":[11,25],"recurrence":[12],"in":[13,90,96,111],"Heidelberg,":[14],"Germany":[15],"-":[16],"streamlined":[18],"mass-spectrometry":[19],"(MS)":[20],"workflow":[21],"for":[22,106],"identification":[23],"relapse":[26],"was":[27,52],"developed.":[28],"This":[29],"project":[30],"has":[31],"multiple":[32],"partners":[33],"from":[34],"clinics,":[35],"laboratories":[36],"and":[37,45,56,64,67,79],"computational":[38,57],"teams.":[39],"For":[40],"optimal":[41],"collaboration,":[42],"consistent":[43],"documentation":[44],"centralized":[46],"storage,":[47],"linked":[49],"data":[50,109],"repository":[51],"designed.":[53],"Clinical,":[54],"laboratory":[55],"group":[58],"members":[59],"interact":[60],"with":[61,103],"this":[62,91],"platform":[63],"store":[65],"meta-":[66],"raw-data.":[68],"The":[69],"specific":[70],"architectural":[71],"choices,":[72],"such":[73],"as":[74,83,85],"pseudonymization":[75],"service,":[76],"uploading":[77],"process":[78],"other":[80,100],"technical":[81],"specifications":[82],"well":[84],"lessons":[86],"learned":[87],"are":[88],"presented":[89],"work.":[92],"Altogether,":[93],"relevant":[94],"information":[95],"order":[97],"provide":[99],"research":[101,117],"groups":[102],"head-start":[105],"tackling":[107],"MS":[108],"management":[110],"context":[113],"projects":[118],"is":[119],"described.":[120]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
