{"id":"https://openalex.org/W4391229233","doi":"https://doi.org/10.3233/shti231043","title":"Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers","display_name":"Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers","publication_year":2024,"publication_date":"2024-01-25","ids":{"openalex":"https://openalex.org/W4391229233","doi":"https://doi.org/10.3233/shti231043","pmid":"https://pubmed.ncbi.nlm.nih.gov/38269887"},"language":"en","primary_location":{"id":"doi:10.3233/shti231043","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti231043","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231043","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231043","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065790431","display_name":"Avisha Das","orcid":"https://orcid.org/0000-0002-5015-2665"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Avisha Das","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052155290","display_name":"Li Zhao","orcid":"https://orcid.org/0000-0001-5095-3377"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhao Li","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100366941","display_name":"Wei Qiang","orcid":"https://orcid.org/0000-0002-0044-810X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qiang Wei","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103003102","display_name":"Jianfu Li","orcid":"https://orcid.org/0009-0004-9378-8462"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jianfu Li","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059118164","display_name":"Liang\u2010Chin Huang","orcid":"https://orcid.org/0000-0001-5661-8940"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liang-chin Huang","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715220","display_name":"Yan Hu","orcid":"https://orcid.org/0009-0008-2413-5918"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yan Hu","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101761496","display_name":"Rongbin Li","orcid":"https://orcid.org/0000-0001-6246-5004"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rongbin Li","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091809743","display_name":"W. Jim Zheng","orcid":"https://orcid.org/0000-0001-7411-6047"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wenjin Jim Zheng","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100409273","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0001-8470-5558"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston; Yale University; Melax Technologies, Houston","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5065790431"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02707611,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"310","issue":null,"first_page":"639","last_page":"643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9334999918937683,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9035999774932861,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.860115647315979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7304737567901611},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.682350754737854},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6195753812789917},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6100358963012695},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.6015371084213257},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5809446573257446},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5281935930252075},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4862862825393677},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43893691897392273},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3360311985015869},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.23985445499420166},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23706898093223572},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.23166534304618835},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09397995471954346}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.860115647315979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7304737567901611},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.682350754737854},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6195753812789917},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6100358963012695},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.6015371084213257},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5809446573257446},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5281935930252075},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4862862825393677},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43893691897392273},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3360311985015869},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.23985445499420166},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23706898093223572},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.23166534304618835},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09397995471954346},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011211","descriptor_name":"Electric Power Supplies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti231043","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti231043","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231043","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:38269887","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38269887","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13034061","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13034061/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stud Health Technol Inform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3233/shti231043","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti231043","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231043","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1419835852","display_name":null,"funder_award_id":"R56AG069880","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G1923038014","display_name":null,"funder_award_id":"1UL1TR003167","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3120388081","display_name":null,"funder_award_id":"RP170668","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G4156463097","display_name":null,"funder_award_id":"NIA R56AG069880","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5999860005","display_name":null,"funder_award_id":"R56AG069880","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6247586359","display_name":null,"funder_award_id":"R01AG066749","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6646588417","display_name":null,"funder_award_id":"CPRIT RP210045","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G8100577519","display_name":null,"funder_award_id":"RP210045","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G8507209383","display_name":null,"funder_award_id":"R01AG066749","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8770013317","display_name":null,"funder_award_id":"RP210045","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391229233.pdf","grobid_xml":"https://content.openalex.org/works/W4391229233.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2030531674","https://openalex.org/W2097960255","https://openalex.org/W2167289895","https://openalex.org/W2883380892","https://openalex.org/W2896457183","https://openalex.org/W3046562558","https://openalex.org/W4286226650","https://openalex.org/W6600034794","https://openalex.org/W6602368977","https://openalex.org/W6606018711"],"related_works":["https://openalex.org/W2251332378","https://openalex.org/W2064314529","https://openalex.org/W122651434","https://openalex.org/W2915573705","https://openalex.org/W2057069926","https://openalex.org/W4387356431","https://openalex.org/W2106349067","https://openalex.org/W3004540147","https://openalex.org/W2489933339","https://openalex.org/W3045642779"],"abstract_inverted_index":{"Automatic":[0],"extraction":[1,129],"of":[2,25,77,86,99,107,119],"relations":[3,41],"between":[4],"drugs/chemicals":[5],"and":[6,51,94,123],"proteins":[7],"from":[8,42,70,130],"ever-growing":[9],"biomedical":[10,59,71,131],"literature":[11],"is":[12],"required":[13],"to":[14,37,61,65],"build":[15,62],"up-to-date":[16],"knowledge":[17],"bases":[18],"in":[19,47],"biomedicine.":[20],"To":[21],"promote":[22],"the":[23,34,48,74,96,117],"development":[24],"automated":[26],"methods,":[27],"BioCreative-VII":[28],"organized":[29],"a":[30],"shared":[31,49],"task":[32,50],"-":[33],"DrugProt":[35],"track,":[36],"recognize":[38],"drug-protein":[39,68],"entity":[40],"PubMed":[43],"abstracts.":[44],"We":[45],"participated":[46],"leveraged":[52],"deep":[53],"learning-based":[54],"transformer":[55,121],"models":[56,122],"pre-trained":[57],"on":[58,95],"data":[60],"ensemble":[63,124],"approaches":[64,125],"automatically":[66],"extract":[67],"relation":[69,128],"literature.":[72,132],"On":[73],"main":[75],"corpora":[76],"10,750":[78],"abstracts,":[79],"our":[80,102],"best":[81],"system":[82,103,113],"obtained":[83],"an":[84],"F1-score":[85,106],"77.60%":[87],"(ranked":[88,109],"4th":[89],"among":[90,111],"30":[91],"participating":[92],"teams),":[93],"large-scale":[97],"corpus":[98],"2.4M":[100],"documents,":[101],"achieved":[104],"micro-averaged":[105],"77.32%":[108],"2nd":[110],"9":[112],"submissions).":[114],"This":[115],"demonstrates":[116],"effectiveness":[118],"domain-specific":[120],"for":[126],"automatic":[127]},"counts_by_year":[],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
