{"id":"https://openalex.org/W4391229640","doi":"https://doi.org/10.3233/shti231032","title":"Rule-Based Natural Language Processing Pipeline to Detect Medication-Related Named Entities: Insights for Transfer Learning","display_name":"Rule-Based Natural Language Processing Pipeline to Detect Medication-Related Named Entities: Insights for Transfer Learning","publication_year":2024,"publication_date":"2024-01-25","ids":{"openalex":"https://openalex.org/W4391229640","doi":"https://doi.org/10.3233/shti231032","pmid":"https://pubmed.ncbi.nlm.nih.gov/38269876"},"language":"en","primary_location":{"id":"doi:10.3233/shti231032","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231032","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231032","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231032","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024939512","display_name":"Zoie Shui-Yee Wong","orcid":"https://orcid.org/0000-0003-4499-9779"},"institutions":[{"id":"https://openalex.org/I4210092806","display_name":"St. Luke's International University","ror":"https://ror.org/00e5yzw53","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210092806"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Zoie S.Y. Wong","raw_affiliation_strings":["Graduate School of Public Health, St. Luke\u2019s International University, OMURA Susumu & Mieko Memorial St. Luke\u2019s Center for Clinical Academia, Japan","Graduate School of Public Health, St. Luke's International University, OMURA Susumu & Mieko Memorial St. Luke's Center for Clinical Academia, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Public Health, St. Luke\u2019s International University, OMURA Susumu & Mieko Memorial St. Luke\u2019s Center for Clinical Academia, Japan","institution_ids":["https://openalex.org/I4210092806"]},{"raw_affiliation_string":"Graduate School of Public Health, St. Luke's International University, OMURA Susumu & Mieko Memorial St. Luke's Center for Clinical Academia, Japan","institution_ids":["https://openalex.org/I4210092806"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Data Artist Team","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092806","display_name":"St. Luke's International University","ror":"https://ror.org/00e5yzw53","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210092806"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Data Artist Team","raw_affiliation_strings":["Graduate School of Public Health, St. Luke's International University, OMURA Susumu & Mieko Memorial St. Luke's Center for Clinical Academia, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Public Health, St. Luke's International University, OMURA Susumu & Mieko Memorial St. Luke's Center for Clinical Academia, Japan","institution_ids":["https://openalex.org/I4210092806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111118449","display_name":"Neil Waters","orcid":null},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210092806","display_name":"St. Luke's International University","ror":"https://ror.org/00e5yzw53","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210092806"]}],"countries":["AU","JP"],"is_corresponding":false,"raw_author_name":"Neil Waters","raw_affiliation_strings":["Graduate School of Public Health, St. Luke\u2019s International University, OMURA Susumu & Mieko Memorial St. Luke\u2019s Center for Clinical Academia, Japan","Centre for Big Data Research in Health, The University of New South Wales"],"affiliations":[{"raw_affiliation_string":"Graduate School of Public Health, St. Luke\u2019s International University, OMURA Susumu & Mieko Memorial St. Luke\u2019s Center for Clinical Academia, Japan","institution_ids":["https://openalex.org/I4210092806"]},{"raw_affiliation_string":"Centre for Big Data Research in Health, The University of New South Wales","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021444442","display_name":"Nicholas I-Hsien Kuo","orcid":"https://orcid.org/0000-0001-8749-7280"},"institutions":[{"id":"https://openalex.org/I158934434","display_name":"Zhongnan University of Economics and Law","ror":"https://ror.org/04yqxxq63","country_code":"CN","type":"education","lineage":["https://openalex.org/I158934434"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Nicholas I-Hsien Kuo","raw_affiliation_strings":["Centre for Big Data Research in Health, The University of New South Wales","School of Statistics and Mathematics, Zhongnan University of Economics and Law, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Centre for Big Data Research in Health, The University of New South Wales","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Statistics and Mathematics, Zhongnan University of Economics and Law, Wuhan, China","institution_ids":["https://openalex.org/I158934434"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089429883","display_name":"Jiaxing Liu","orcid":"https://orcid.org/0000-0002-5184-4313"},"institutions":[{"id":"https://openalex.org/I158934434","display_name":"Zhongnan University of Economics and Law","ror":"https://ror.org/04yqxxq63","country_code":"CN","type":"education","lineage":["https://openalex.org/I158934434"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxing Liu","raw_affiliation_strings":["School of Statistics and Mathematics, Zhongnan University of Economics and Law, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Statistics and Mathematics, Zhongnan University of Economics and Law, Wuhan, China","institution_ids":["https://openalex.org/I158934434"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024939512"],"corresponding_institution_ids":["https://openalex.org/I4210092806"],"apc_list":null,"apc_paid":null,"fwci":2.3735,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87131987,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"310","issue":null,"first_page":"584","last_page":"588"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8791990280151367},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8306517004966736},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7031279802322388},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6634862422943115},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6373859643936157},{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.6265000104904175},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.6251074075698853},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.49079522490501404},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4870739281177521},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4474923610687256}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8791990280151367},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8306517004966736},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7031279802322388},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6634862422943115},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6373859643936157},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.6265000104904175},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.6251074075698853},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.49079522490501404},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4870739281177521},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4474923610687256},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008508","descriptor_name":"Medication Errors","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D008508","descriptor_name":"Medication Errors","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D008508","descriptor_name":"Medication Errors","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021641","descriptor_name":"Recognition, Psychology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021641","descriptor_name":"Recognition, Psychology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021641","descriptor_name":"Recognition, Psychology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti231032","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231032","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231032","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:38269876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38269876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti231032","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti231032","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI231032","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391229640.pdf"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2651948199","https://openalex.org/W2919929668","https://openalex.org/W3032796816","https://openalex.org/W3099481625","https://openalex.org/W4281715736","https://openalex.org/W4284896435"],"related_works":["https://openalex.org/W3149011051","https://openalex.org/W2334378031","https://openalex.org/W842810586","https://openalex.org/W2916255597","https://openalex.org/W3095980030","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W4379379356","https://openalex.org/W2489933339"],"abstract_inverted_index":{"We":[0],"document":[1],"the":[2,32,44,64],"procedure":[3],"and":[4,42,63,76,82],"performance":[5,45],"of":[6,46,57,74],"a":[7,38,55,72],"rule-based":[8,33,52],"NLP":[9],"system":[10],"that,":[11],"using":[12],"transfer":[13],"learning,":[14],"automatically":[15],"extracts":[16],"essential":[17],"named":[18,79],"entities":[19],"related":[20],"to":[21,36,92],"drug":[22],"errors":[23],"from":[24],"Japanese":[25],"free-text":[26],"incident":[27,48],"reports.":[28],"Subsequently,":[29],"we":[30],"used":[31],"annotated":[34],"data":[35,70],"fine-tune":[37],"pre-trained":[39],"BERT":[40,65],"model":[41,66,88],"examined":[43],"medication-related":[47,97],"report":[49],"prediction.":[50],"The":[51,87],"pipeline":[53],"achieved":[54,71],"macro-F1-score":[56,73],"0.81":[58],"in":[59,96],"an":[60],"internal":[61],"dataset":[62],"fine-tuned":[67],"with":[68],"rule-annotated":[69],"0.97":[75],"0.75":[77],"for":[78],"entity":[80],"recognition":[81],"relation":[83],"extraction":[84],"tasks,":[85],"respectively.":[86],"can":[89],"be":[90],"deployed":[91],"other,":[93],"similar":[94],"problems":[95],"clinical":[98],"texts.":[99]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
