{"id":"https://openalex.org/W4377092826","doi":"https://doi.org/10.3233/shti230352","title":"The RCX Extension Hub: A Resource for Implementations Extending the R Adaption of the Cytoscape Exchange Format","display_name":"The RCX Extension Hub: A Resource for Implementations Extending the R Adaption of the Cytoscape Exchange Format","publication_year":2023,"publication_date":"2023-05-18","ids":{"openalex":"https://openalex.org/W4377092826","doi":"https://doi.org/10.3233/shti230352","pmid":"https://pubmed.ncbi.nlm.nih.gov/37203586"},"language":"en","primary_location":{"id":"doi:10.3233/shti230352","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230352","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230352","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230352","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075084280","display_name":"Florian Auer","orcid":"https://orcid.org/0000-0002-5320-8900"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Florian Auer","raw_affiliation_strings":["IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5320-8900","affiliations":[{"raw_affiliation_string":"IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091979971","display_name":"Nadja Bramkamp","orcid":"https://orcid.org/0000-0001-8436-5274"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadja Bramkamp (Beckmann)","raw_affiliation_strings":["IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8436-5274","affiliations":[{"raw_affiliation_string":"IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012409971","display_name":"Simone Mayer","orcid":"https://orcid.org/0000-0002-7825-5738"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Simone Mayer","raw_affiliation_strings":["IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7825-5738","affiliations":[{"raw_affiliation_string":"IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036358389","display_name":"Dominik M\u00fcller","orcid":"https://orcid.org/0000-0003-0838-9885"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominik M\u00fcller","raw_affiliation_strings":["IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0838-9885","affiliations":[{"raw_affiliation_string":"IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010964383","display_name":"Frank Kr\u00e4mer","orcid":"https://orcid.org/0000-0002-2857-7122"},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank Kramer","raw_affiliation_strings":["IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2857-7122","affiliations":[{"raw_affiliation_string":"IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany","institution_ids":["https://openalex.org/I179225836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075084280"],"corresponding_institution_ids":["https://openalex.org/I179225836"],"apc_list":null,"apc_paid":null,"fwci":0.8176,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.7225369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"302","issue":null,"first_page":"1075","last_page":"1076"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.8976833820343018},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8082708120346069},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.7227017283439636},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.5183632969856262},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.4836884140968323},{"id":"https://openalex.org/keywords/realization","display_name":"Realization (probability)","score":0.46843963861465454},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3912021815776825},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.369948148727417},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.33957841992378235},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.28910017013549805},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20426714420318604},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18524056673049927},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.11868143081665039}],"concepts":[{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.8976833820343018},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8082708120346069},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.7227017283439636},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.5183632969856262},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.4836884140968323},{"id":"https://openalex.org/C2781089630","wikidata":"https://www.wikidata.org/wiki/Q21856745","display_name":"Realization (probability)","level":2,"score":0.46843963861465454},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3912021815776825},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.369948148727417},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.33957841992378235},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.28910017013549805},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20426714420318604},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18524056673049927},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.11868143081665039},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti230352","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230352","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230352","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:37203586","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37203586","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:uni-augsburg.opus-bayern.de:104623","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:bvb:384-opus4-1046236","pdf_url":"https://opus.bibliothek.uni-augsburg.de/opus4/files/104623/104623.pdf","source":{"id":"https://openalex.org/S4306400930","display_name":"OPUS (Augsburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119916105","host_organization_name":"Augsburg University","host_organization_lineage":["https://openalex.org/I119916105"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:bookpart"}],"best_oa_location":{"id":"doi:10.3233/shti230352","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230352","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230352","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4377092826.pdf","grobid_xml":"https://content.openalex.org/works/W4377092826.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1871096589","https://openalex.org/W2766470321","https://openalex.org/W4225693235"],"related_works":["https://openalex.org/W4282938614","https://openalex.org/W2906929912","https://openalex.org/W2350686889","https://openalex.org/W1965839502","https://openalex.org/W2099755394","https://openalex.org/W2621742671","https://openalex.org/W2114764029","https://openalex.org/W4245251736","https://openalex.org/W2913352275","https://openalex.org/W1547986167"],"abstract_inverted_index":{"Public":[0],"repositories":[1],"provide":[2],"access":[3,86],"to":[4,12,34,87],"biological":[5],"networks":[6],"for":[7,38,112],"investigations,":[8],"and":[9,18,31,45,61,71,76,85,109],"subsequently":[10],"serve":[11],"distribute":[13],"the":[14,35,64,74,90,100,113],"network":[15,39,58],"encoded":[16],"biomedical":[17],"even":[19],"clinically":[20],"relevant":[21],"results.":[22],"However,":[23],"inclusion":[24],"of":[25,50,56,63,73,89,102,115],"complementary":[26],"information":[27,52],"requires":[28,69],"data":[29,37],"structures":[30],"implementations":[32],"customized":[33],"integrated":[36],"representation,":[40],"usage":[41],"in":[42,95],"supporting":[43],"application,":[44],"extending":[46],"analysis":[47],"functionality.":[48],"Partitioning":[49],"this":[51],"into":[53],"individual":[54],"aspects":[55],"a":[57,110],"facilitates":[59],"compatibility":[60],"reusability":[62],"network-based":[65],"results,":[66],"but":[67],"also":[68],"support":[70],"accessibility":[72],"extensions":[75,88],"their":[77],"implementations.":[78],"The":[79,97],"RCX":[80],"extension":[81,104,117],"hub":[82,98],"offers":[83],"overview":[84],"Cytoscape":[91],"exchange":[92],"format":[93],"implemented":[94],"R.":[96],"supports":[99],"realization":[101],"self-customized":[103],"through":[105],"guides,":[106],"example":[107],"implementations,":[108],"template":[111],"creation":[114],"R":[116],"packages.":[118]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-19T19:40:27.379048","created_date":"2025-10-10T00:00:00"}
