{"id":"https://openalex.org/W4377094552","doi":"https://doi.org/10.3233/shti230095","title":"Development of a Command Line Interface for the Analysis of Result Sets from Automated Queries to Literature Databases","display_name":"Development of a Command Line Interface for the Analysis of Result Sets from Automated Queries to Literature Databases","publication_year":2023,"publication_date":"2023-05-18","ids":{"openalex":"https://openalex.org/W4377094552","doi":"https://doi.org/10.3233/shti230095","pmid":"https://pubmed.ncbi.nlm.nih.gov/37203639"},"language":"en","primary_location":{"id":"doi:10.3233/shti230095","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230095","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230095","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230095","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059434035","display_name":"Tobias Brix","orcid":"https://orcid.org/0000-0002-1557-8097"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tobias J. Brix","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091980373","display_name":"Malte Berentzen","orcid":null},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Malte Berentzen","raw_affiliation_strings":["Institute of Computer Science, University of M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024474044","display_name":"Ludger Becker","orcid":null},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ludger Becker","raw_affiliation_strings":["Institute of Computer Science, University of M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057156197","display_name":"Michael Storck","orcid":"https://orcid.org/0000-0002-8160-0184"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Storck","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033176798","display_name":"Julian Varghese","orcid":"https://orcid.org/0000-0002-7206-3719"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Varghese","raw_affiliation_strings":["Institute of Medical Informatics, University of M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5059434035"],"corresponding_institution_ids":["https://openalex.org/I22465464"],"apc_list":null,"apc_paid":null,"fwci":1.6181,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.83408834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"302","issue":null,"first_page":"162","last_page":"166"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10845","display_name":"Advanced Causal Inference Techniques","score":0.9483000040054321,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13309","display_name":"Reliability and Agreement in Measurement","score":0.9042999744415283,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8229250907897949},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6030228734016418},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5899187326431274},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5659281015396118},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5131000280380249},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.48792240023612976},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3540702760219574},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22802770137786865},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19973567128181458}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8229250907897949},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6030228734016418},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5899187326431274},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5659281015396118},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5131000280380249},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.48792240023612976},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3540702760219574},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22802770137786865},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19973567128181458},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti230095","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230095","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230095","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:37203639","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37203639","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti230095","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230095","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230095","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4377094552.pdf","grobid_xml":"https://content.openalex.org/works/W4377094552.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1461570683","https://openalex.org/W1503428008","https://openalex.org/W1647136737","https://openalex.org/W2560438049","https://openalex.org/W3118615836","https://openalex.org/W4220659473","https://openalex.org/W4236476849"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2106424170","https://openalex.org/W1985426483","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2010935248","https://openalex.org/W2768810474"],"abstract_inverted_index":{"The":[0,21,95,134],"first":[1],"step":[2],"of":[3,10,23,62,72,87,90,103,141,145,154,192],"a":[4,14,78,117,149,185,226],"systematic":[5,186],"review":[6,26],"is":[7,27,45,75],"the":[8,24,32,50,55,84,137,142,155,190,195,205,214],"identification":[9],"publications":[11,91],"related":[12],"to":[13,76,189,220],"research":[15],"question":[16],"in":[17,37,122,173],"different":[18,56,63,159],"literature":[19,64,93,104,151,206,223],"databases.":[20,94,160],"quality":[22],"final":[25],"mainly":[28],"influenced":[29],"by":[30],"finding":[31],"best":[33],"search":[34],"query":[35,52,157],"resulting":[36],"high":[38],"precision":[39],"and":[40,47,53,106,124,139,163,209],"recall.":[41],"Usually,":[42],"this":[43,73],"process":[44],"iterative":[46],"requires":[48],"refining":[49],"initial":[51],"comparing":[54],"result":[57,60,88,143],"sets.":[58],"Furthermore,":[59],"sets":[61,89,144],"databases":[65,207],"must":[66],"be":[67,108,168,198,218],"compared":[68],"as":[69,126,170,181],"well.":[70],"Objective":[71],"work":[74],"develop":[77],"command":[79,118],"line":[80,119],"interface,":[81],"which":[82],"supports":[83],"automated":[85],"comparison":[86],"from":[92],"tool":[96,135,196,215],"should":[97,107],"incorporate":[98],"existing":[99,201],"application":[100,128,228],"programming":[101,229],"interfaces":[102],"database":[105,152,224],"integrable":[109],"into":[110,200],"more":[111],"complex":[112],"analysis":[113,202],"scripts.":[114,203],"We":[115],"present":[116],"interface":[120],"written":[121],"Python":[123],"available":[125],"open-source":[127],"at":[129],"https://imigitlab.uni-muenster.de/published/literature-cli":[130],"under":[131],"MIT":[132],"license.":[133],"calculates":[136],"intersection":[138],"differences":[140],"multiple":[146],"queries":[147],"on":[148,158],"single":[150],"or":[153,172,180],"same":[156],"These":[161],"results":[162],"their":[164],"configurable":[165],"metadata":[166],"can":[167,197,216],"exported":[169],"CSV-files":[171],"Research":[174],"Information":[175],"System":[176],"format":[177],"for":[178,184],"post-processing":[179],"starting":[182],"point":[183],"review.":[187],"Due":[188],"support":[191,221],"inline":[193],"parameters,":[194],"integrated":[199],"Currently,":[204],"PubMed":[208],"DBLP":[210],"are":[211],"supported,":[212],"but":[213],"easily":[217],"extended":[219],"any":[222],"providing":[225],"web-based":[227],"interface.":[230]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-12-21T01:58:51.020947","created_date":"2025-10-10T00:00:00"}
