{"id":"https://openalex.org/W4377094308","doi":"https://doi.org/10.3233/shti230064","title":"Reproducibility in 2023 \u2013 An End-to-End Template for Analysis and Manuscript Writing","display_name":"Reproducibility in 2023 \u2013 An End-to-End Template for Analysis and Manuscript Writing","publication_year":2023,"publication_date":"2023-05-18","ids":{"openalex":"https://openalex.org/W4377094308","doi":"https://doi.org/10.3233/shti230064","pmid":"https://pubmed.ncbi.nlm.nih.gov/37203609"},"language":"en","primary_location":{"id":"doi:10.3233/shti230064","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230064","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032512636","display_name":"Jonathan M. Mang","orcid":"https://orcid.org/0000-0003-0518-4710"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jonathan M. Mang","raw_affiliation_strings":["Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052931994","display_name":"Hans\u2010Ulrich Prokosch","orcid":"https://orcid.org/0000-0001-6200-753X"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]},{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Ulrich Prokosch","raw_affiliation_strings":["Chair of Medical Informatics, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Medical Informatics, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]},{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041778310","display_name":"Lorenz A. Kapsner","orcid":"https://orcid.org/0000-0003-1866-860X"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]},{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lorenz A. Kapsner","raw_affiliation_strings":["Institute of Radiology, Universit\u00e4tsklinikum Erlangen, Friedrich-Alexander-University Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Radiology, Universit\u00e4tsklinikum Erlangen, Friedrich-Alexander-University Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053","https://openalex.org/I181369854"]},{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5032512636"],"corresponding_institution_ids":["https://openalex.org/I4210088053"],"apc_list":null,"apc_paid":null,"fwci":3.0085,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.91295812,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"302","issue":null,"first_page":"58","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.932200014591217,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7268050312995911},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7138440012931824},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.6395975351333618},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.576808750629425},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4253271222114563},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.42352136969566345},{"id":"https://openalex.org/keywords/end-user","display_name":"End user","score":0.41960057616233826},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3424888849258423},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2768256962299347},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2431301772594452},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18291416764259338}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7268050312995911},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7138440012931824},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.6395975351333618},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.576808750629425},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4253271222114563},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.42352136969566345},{"id":"https://openalex.org/C91262260","wikidata":"https://www.wikidata.org/wiki/Q528074","display_name":"End user","level":2,"score":0.41960057616233826},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3424888849258423},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2768256962299347},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2431301772594452},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18291416764259338}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti230064","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:37203609","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37203609","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti230064","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/shti230064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1304428810","display_name":null,"funder_award_id":"(MIRACUM","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8029837981","display_name":null,"funder_award_id":"01ZZ1801A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8130184298","display_name":null,"funder_award_id":"FKZ: 01ZZ1801A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8904012666","display_name":null,"funder_award_id":"01ZZ1801","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4377094308.pdf","grobid_xml":"https://content.openalex.org/works/W4377094308.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W2008985174","https://openalex.org/W2020859734","https://openalex.org/W2023953679","https://openalex.org/W2036318837","https://openalex.org/W2063463192","https://openalex.org/W2142188478","https://openalex.org/W2158378675","https://openalex.org/W2242464395","https://openalex.org/W2296335794","https://openalex.org/W2582743722","https://openalex.org/W2944196828","https://openalex.org/W3124249310","https://openalex.org/W4213251046","https://openalex.org/W4234108617","https://openalex.org/W4388471937"],"related_works":["https://openalex.org/W2108595774","https://openalex.org/W2387713776","https://openalex.org/W2081035100","https://openalex.org/W2278173804","https://openalex.org/W3206324740","https://openalex.org/W2883909112","https://openalex.org/W2062363996","https://openalex.org/W2372799935","https://openalex.org/W3141577076","https://openalex.org/W2102412035"],"abstract_inverted_index":{"Reproducibility":[0],"imposes":[1],"some":[2],"special":[3],"requirements":[4],"at":[5],"different":[6],"stages":[7],"of":[8,30],"each":[9],"project,":[10],"including":[11,17],"reproducible":[12,33,77,97],"workflows":[13],"for":[14,95,104],"the":[15,28,31,62,67,73,109,113],"analysis":[16,69,110],"to":[18,26,70,85],"follow":[19],"best":[20],"practices":[21],"regarding":[22],"code":[23],"style":[24],"and":[25,46,107,111],"make":[27],"creation":[29,48],"manuscript":[32,74],"as":[34,44,51],"well.":[35],"Available":[36],"tools":[37,49],"therefore":[38],"include":[39],"version":[40],"control":[41],"systems":[42],"such":[43,50],"Git":[45],"document":[47],"Quarto":[52],"or":[53],"R":[54],"Markdown.":[55],"However,":[56],"a":[57,76,101,116],"re-usable":[58],"project":[59],"template":[60,94,119],"mapping":[61],"entire":[63],"process":[64],"from":[65],"performing":[66],"data":[68],"finally":[71],"writing":[72],"in":[75,115],"manner":[78],"is":[79],"yet":[80],"lacking.":[81],"This":[82,118],"work":[83],"aims":[84],"fill":[86],"this":[87],"gap":[88],"by":[89],"presenting":[90],"an":[91],"open":[92],"source":[93],"conducting":[96,108],"research":[98],"projects":[99],"utilizing":[100],"containerized":[102],"framework":[103],"both":[105],"developing":[106],"summarizing":[112],"results":[114],"manuscript.":[117],"can":[120],"be":[121],"used":[122],"instantly":[123],"without":[124],"any":[125],"customization.":[126]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
