{"id":"https://openalex.org/W4377092021","doi":"https://doi.org/10.3233/shti230061","title":"Breaking Barriers for Interoperability: A Reference Implementation of CSV-FHIR Transformation Using Open-Source Tools","display_name":"Breaking Barriers for Interoperability: A Reference Implementation of CSV-FHIR Transformation Using Open-Source Tools","publication_year":2023,"publication_date":"2023-05-18","ids":{"openalex":"https://openalex.org/W4377092021","doi":"https://doi.org/10.3233/shti230061","pmid":"https://pubmed.ncbi.nlm.nih.gov/37203606"},"language":"en","primary_location":{"id":"doi:10.3233/shti230061","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti230061","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230061","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230061","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046540672","display_name":"Samer Alkarkoukly","orcid":"https://orcid.org/0000-0003-1891-1366"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210138270","display_name":"Cologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases","ror":"https://ror.org/04c4bwh63","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210138270"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Samer Alkarkoukly","raw_affiliation_strings":["CECAD, University of Cologne and University Hospital Cologne, Cologne, Germany","Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","University Hospital Cologne, Cologne, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1891-1366","affiliations":[{"raw_affiliation_string":"CECAD, University of Cologne and University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I4210138270","https://openalex.org/I180923762"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I180923762"]},{"raw_affiliation_string":"University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086684091","display_name":"Md. Mostafa Kamal","orcid":"https://orcid.org/0000-0002-5506-4875"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210138270","display_name":"Cologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases","ror":"https://ror.org/04c4bwh63","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210138270"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Md. Mostafa Kamal","raw_affiliation_strings":["CECAD, University of Cologne and University Hospital Cologne, Cologne, Germany","Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","University Hospital Cologne, Cologne, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5506-4875","affiliations":[{"raw_affiliation_string":"CECAD, University of Cologne and University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I4210138270","https://openalex.org/I180923762"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I180923762"]},{"raw_affiliation_string":"University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067635650","display_name":"Oya Beyan","orcid":"https://orcid.org/0000-0001-7611-3501"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210110507","display_name":"Fraunhofer Institute for Applied Information Technology","ror":"https://ror.org/01ak24c12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210110507","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oya Beyan","raw_affiliation_strings":["Department of Data Science and Artificial Intelligence, Fraunhofer FIT, Germany","Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","University Hospital Cologne, Cologne, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7611-3501","affiliations":[{"raw_affiliation_string":"Department of Data Science and Artificial Intelligence, Fraunhofer FIT, Germany","institution_ids":["https://openalex.org/I4210110507"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755","https://openalex.org/I180923762"]},{"raw_affiliation_string":"University Hospital Cologne, Cologne, Germany","institution_ids":["https://openalex.org/I4210153755"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":8.5794,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.97526578,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"302","issue":null,"first_page":"43","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9038000106811523,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.8363139629364014},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7894490361213684},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6060451865196228},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.48473069071769714},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4374099373817444},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.39284852147102356},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36512434482574463},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32383811473846436},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15046754479408264}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.8363139629364014},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7894490361213684},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6060451865196228},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.48473069071769714},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4374099373817444},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.39284852147102356},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36512434482574463},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32383811473846436},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15046754479408264}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063005","descriptor_name":"Health Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063005","descriptor_name":"Health Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063005","descriptor_name":"Health Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti230061","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti230061","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230061","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:37203606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37203606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/447864","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/447864","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"}],"best_oa_location":{"id":"doi:10.3233/shti230061","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti230061","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI230061","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6399999856948853}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W3007133930","https://openalex.org/W3008824846","https://openalex.org/W4225819664","https://openalex.org/W4282051828","https://openalex.org/W6773930186"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W4312626803","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509","https://openalex.org/W3209454962","https://openalex.org/W79697243","https://openalex.org/W2314257840"],"abstract_inverted_index":{"FHIR":[0,21,67,108],"is":[1,22,33,83],"a":[2,34,53],"widely":[3],"accepted":[4],"interoperability":[5],"standard":[6],"for":[7,37,86],"exchanging":[8],"medical":[9],"data,":[10],"but":[11],"data":[12,58,64,106],"transformation":[13],"from":[14,59],"the":[15,97,113],"primary":[16],"health":[17],"information":[18],"systems":[19],"into":[20,66,107],"usually":[23],"challenging":[24],"and":[25,30,40,89,91,95,117],"requires":[26],"advanced":[27,74],"technical":[28,75],"skills":[29],"infrastructure.":[31],"There":[32],"critical":[35],"need":[36],"low-cost":[38],"solutions,":[39],"using":[41,69],"Mirth":[42,70],"Connect":[43,71],"as":[44],"an":[45],"open-source":[46],"tool":[47],"provides":[48],"this":[49],"opportunity.":[50],"We":[51],"developed":[52],"reference":[54,81],"implementation":[55,82],"to":[56,103],"transform":[57,104],"CSV":[60],"(the":[61],"most":[62],"common":[63],"format)":[65],"resources":[68,76],"without":[72],"any":[73],"or":[77],"programming":[78],"skills.":[79],"This":[80],"tested":[84],"successfully":[85],"both":[87],"quality":[88],"performance,":[90],"it":[92],"enables":[93],"reproducing":[94],"improving":[96],"implemented":[98],"approach":[99],"by":[100],"healthcare":[101],"providers":[102],"raw":[105],"resources.":[109],"For":[110],"ensuring":[111],"replicability,":[112],"used":[114],"channel,":[115],"mapping,":[116],"templates":[118],"are":[119],"available":[120],"publicly":[121],"on":[122],"GitHub":[123],"(https://github.com/alkarkoukly/CSV-FHIR-Transformer).":[124]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
