{"id":"https://openalex.org/W4281488837","doi":"https://doi.org/10.3233/shti220614","title":"Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature","display_name":"Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature","publication_year":2022,"publication_date":"2022-05-25","ids":{"openalex":"https://openalex.org/W4281488837","doi":"https://doi.org/10.3233/shti220614","pmid":"https://pubmed.ncbi.nlm.nih.gov/35612233"},"language":"en","primary_location":{"id":"doi:10.3233/shti220614","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220614","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220614","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220614","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069421871","display_name":"Nona Naderi","orcid":"https://orcid.org/0000-0002-1272-7640"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Nona Naderi","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Switzerland","University of Applied Sciences and Arts of Western Switzerland (HES-SO)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland (HES-SO)","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076116299","display_name":"Ana\u00efs Mottaz","orcid":"https://orcid.org/0000-0003-0080-9451"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ana\u00efs Mottaz","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Switzerland","University of Applied Sciences and Arts of Western Switzerland (HES-SO)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland (HES-SO)","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042070839","display_name":"Douglas Teodoro","orcid":"https://orcid.org/0000-0001-6238-4503"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Douglas Teodoro","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Switzerland","University of Applied Sciences and Arts of Western Switzerland (HES-SO)","University of Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland (HES-SO)","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"University of Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Switzerland","University of Applied Sciences and Arts of Western Switzerland (HES-SO)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland (HES-SO)","institution_ids":["https://openalex.org/I173439891"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069421871"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I173439891"],"apc_list":null,"apc_paid":null,"fwci":1.9976,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85741347,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"294","issue":null,"first_page":"876","last_page":"877"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9478999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7143285870552063},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6507042050361633},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6506766676902771},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.6377374529838562},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.614120364189148},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.5114859342575073},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4754863977432251},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.42628544569015503},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.269123911857605},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.13410916924476624},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11050635576248169}],"concepts":[{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7143285870552063},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6507042050361633},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6506766676902771},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.6377374529838562},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.614120364189148},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.5114859342575073},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4754863977432251},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.42628544569015503},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.269123911857605},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.13410916924476624},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11050635576248169},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060145","descriptor_name":"Text Messaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060145","descriptor_name":"Text Messaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060145","descriptor_name":"Text Messaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.3233/shti220614","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220614","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220614","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35612233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35612233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:162731","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:162731","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 0926-9630","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:hesso.tind.io:11047","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/11047","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/11047","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3233/shti220614","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220614","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220614","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6700000166893005,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G6998528659","display_name":null,"funder_award_id":"825775","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281488837.pdf","grobid_xml":"https://content.openalex.org/works/W4281488837.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2122402213","https://openalex.org/W2309021002","https://openalex.org/W2401834729","https://openalex.org/W3046042226"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W1976265003","https://openalex.org/W2054476758","https://openalex.org/W2370378377","https://openalex.org/W2048865712","https://openalex.org/W4210535024","https://openalex.org/W2358294942","https://openalex.org/W4367460280","https://openalex.org/W4328049145"],"abstract_inverted_index":{"We":[0,55,82,131],"present":[1],"an":[2],"analysis":[3],"of":[4,7,33,60,99,138],"supplementary":[5,53,75,86,128,144,151],"materials":[6,76],"PubMed":[8,36],"Central":[9],"(PMC)":[10],"articles":[11,34],"and":[12,18,51,92,119,121,166],"show":[13],"their":[14],"importance":[15],"in":[16,22,117,127,142,162,164],"indexing":[17],"searching":[19],"biomedical":[20],"literature,":[21],"particular":[23,163],"for":[24],"the":[25,58,85,97,134,158],"emerging":[26],"genomic":[27],"medicine":[28],"field.":[29],"On":[30],"a":[31],"subset":[32],"from":[35,47,157],"Central,":[37],"we":[38,93,112,148],"use":[39],"text":[40],"mining":[41],"methods":[42],"to":[43,78],"extract":[44],"MeSH":[45,61,100],"terms":[46,101],"abstracts,":[48],"full":[49],"texts,":[50],"text-based":[52,129,143],"materials.":[54],"find":[56,94,132],"that":[57,96,133,150],"recall":[59,98],"annotations":[62,88,91],"increases":[63,102],"by":[64,103],"about":[65],"5.9":[66],"percentage":[67,105],"points":[68],"(+20%":[69],"on":[70,108],"relative":[71,109],"percentage)":[72],"when":[73],"considering":[74],"compared":[77],"using":[79],"only":[80],"abstracts.":[81],"further":[83],"compare":[84,122],"material":[87],"with":[89,124],"full-text":[90],"out":[95],"1.5":[104],"point":[106],"(+3%":[107],"percentage).":[110],"Additionally,":[111],"analyze":[113],"genetic":[114],"variant":[115],"mentions":[116,125],"abstracts":[118],"full-texts":[120],"them":[123],"found":[126,141],"files.":[130,145],"majority":[135],"(about":[136],"99%)":[137],"variants":[139],"are":[140],"In":[146],"conclusion,":[147],"suggest":[149],"data":[152],"should":[153],"receive":[154],"more":[155],"attention":[156],"information":[159],"retrieval":[160],"community,":[161],"life":[165],"health":[167],"sciences.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
