{"id":"https://openalex.org/W4281480822","doi":"https://doi.org/10.3233/shti220611","title":"Integration of Annotated Phenotype, Gene and Chemical Text Data to Advance Exposome Informatics","display_name":"Integration of Annotated Phenotype, Gene and Chemical Text Data to Advance Exposome Informatics","publication_year":2022,"publication_date":"2022-05-25","ids":{"openalex":"https://openalex.org/W4281480822","doi":"https://doi.org/10.3233/shti220611","pmid":"https://pubmed.ncbi.nlm.nih.gov/35612230"},"language":"en","primary_location":{"id":"doi:10.3233/shti220611","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220611","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220611","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220611","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074983759","display_name":"Christopher Hawthorne","orcid":"https://orcid.org/0000-0002-9145-9022"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Hawthorne","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, UK","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001595112","display_name":"Guillermo L\u00f3pez\u2013Campos","orcid":"https://orcid.org/0000-0003-3011-0940"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guillermo H. Lopez-Campos","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, UK","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4993,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57322428,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"294","issue":null,"first_page":"870","last_page":"871"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exposome","display_name":"Exposome","score":0.8778243660926819},{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.7344326972961426},{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.6672429442405701},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6094440221786499},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5135114789009094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47926995158195496},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4748024046421051},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.46500739455223083},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43570899963378906},{"id":"https://openalex.org/keywords/phenome","display_name":"Phenome","score":0.4334394633769989},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.41983911395072937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3200618624687195},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2793459892272949},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2366938292980194},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23073384165763855},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.19465768337249756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14772522449493408},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08949127793312073},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.0676669180393219}],"concepts":[{"id":"https://openalex.org/C119709500","wikidata":"https://www.wikidata.org/wiki/Q2142347","display_name":"Exposome","level":2,"score":0.8778243660926819},{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.7344326972961426},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.6672429442405701},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6094440221786499},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5135114789009094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47926995158195496},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4748024046421051},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.46500739455223083},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43570899963378906},{"id":"https://openalex.org/C7952369","wikidata":"https://www.wikidata.org/wiki/Q844116","display_name":"Phenome","level":4,"score":0.4334394633769989},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.41983911395072937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3200618624687195},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2793459892272949},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2366938292980194},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23073384165763855},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.19465768337249756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14772522449493408},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08949127793312073},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0676669180393219},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081413","descriptor_name":"Exposome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081413","descriptor_name":"Exposome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081413","descriptor_name":"Exposome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti220611","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220611","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220611","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35612230","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35612230","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/d7e05d0f-8dee-4552-98ae-f21089f36806","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/d7e05d0f-8dee-4552-98ae-f21089f36806","pdf_url":"https://pureadmin.qub.ac.uk/ws/files/327210799/SHTI_294_SHTI220611.pdf","source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hawthorne, C & Lopez-Campos, G H 2022, Integration of annotated phenotype, gene and chemical text data to advance exposome informatics. in B S\u00e9roussi, P Weber, F Dhombres, C Grouin, J-D Liebe, S Pelayo, A Pinna, B Rance, L Sacchi, A Ugon, A Benis & P Gallos (eds), Challenges of trustable AI and added-value on health. Studies in Health Technology and Informatics, vol. 294, IOS Press, pp. 870-871. https://doi.org/10.3233/SHTI220611","raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"doi:10.3233/shti220611","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220611","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220611","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281480822.pdf","grobid_xml":"https://content.openalex.org/works/W4281480822.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1964670939","https://openalex.org/W3033247242","https://openalex.org/W3213166521"],"related_works":["https://openalex.org/W3161139340","https://openalex.org/W4253869242","https://openalex.org/W2796464660","https://openalex.org/W206582387","https://openalex.org/W4225296481","https://openalex.org/W4235457527","https://openalex.org/W1981323832","https://openalex.org/W4387640979","https://openalex.org/W4299603694","https://openalex.org/W4308273207"],"abstract_inverted_index":{"The":[0],"field":[1],"of":[2,7,40,77],"phenomics":[3],"has":[4,29,92],"a":[5,18,56,101],"range":[6],"biomedical":[8],"informatics":[9],"tools":[10],"such":[11,49],"as":[12,50],"the":[13,68],"Human":[14],"Phenotype":[15],"Ontology,":[16],"providing":[17],"structured":[19],"vocabulary":[20],"with":[21],"relationships":[22,63,73,85,116],"between":[23,86],"abnormal":[24],"phenotype":[25,62,109,113],"terms.":[26],"Artificial":[27],"intelligence":[28],"been":[30],"widely":[31],"used":[32,124],"for":[33,58,108],"entity":[34],"extraction":[35],"and":[36,44,52,64,89,91,112,117],"tagging":[37],"large":[38],"corpora":[39],"text":[41],"from":[42,74],"PubMed":[43],"is":[45,55],"reflected":[46],"in":[47],"applications":[48],"PheneBank":[51],"PubTator.":[53],"Phexpo":[54],"tool":[57],"predicting":[59],"chemical":[60,115],"-":[61,110,114],"vice-versa,":[65],"although":[66],"lacks":[67],"ability":[69],"to":[70,94,103,125],"decipher":[71],"known":[72],"unknown.":[75],"Integration":[76],"these":[78,120],"three":[79],"resources":[80],"can":[81,122],"provide":[82],"new":[83,106],"meaningful":[84],"phenotypes,":[87],"genes":[88],"chemicals":[90],"yet":[93],"be":[95,123],"fully":[96],"leveraged.":[97],"Here":[98],"we":[99],"present":[100],"methodology":[102],"construct":[104],"two":[105],"datasets":[107,121],"gene":[111],"showcase":[118],"how":[119],"enhance":[126],"exposome":[127],"informatics.":[128]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
