{"id":"https://openalex.org/W4281905743","doi":"https://doi.org/10.3233/shti220284","title":"Exploring Molecular Mechanisms Within Biomedical Literature","display_name":"Exploring Molecular Mechanisms Within Biomedical Literature","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4281905743","doi":"https://doi.org/10.3233/shti220284","pmid":"https://pubmed.ncbi.nlm.nih.gov/35673222"},"language":"en","primary_location":{"id":"doi:10.3233/shti220284","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220284","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220284","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220284","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058987212","display_name":"Nicole Glendinning","orcid":null},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicole Glendinning","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074983759","display_name":"Christopher Hawthorne","orcid":"https://orcid.org/0000-0002-9145-9022"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Hawthorne","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110352016","display_name":"Stephanie Beck","orcid":null},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephanie Beck","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001595112","display_name":"Guillermo L\u00f3pez\u2013Campos","orcid":"https://orcid.org/0000-0003-3011-0940"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guillermo Lopez-Campos","raw_affiliation_strings":["Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen\u2019s University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12501076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"290","issue":null,"first_page":"1094","last_page":"1095"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9150000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7510685920715332},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4789726734161377},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43602439761161804},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3375331461429596}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7510685920715332},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4789726734161377},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43602439761161804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3375331461429596}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti220284","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220284","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220284","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35673222","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35673222","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:openaire/e5613fab-475f-4c6b-b877-7c67e11b593c","is_oa":false,"landing_page_url":"https://pure.qub.ac.uk/en/publications/e5613fab-475f-4c6b-b877-7c67e11b593c","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Glendinning, N, Hawthorne, C, Beck, S & Lopez-Campos, G 2022, Exploring molecular mechanisms within biomedical literature. in P Otero, P Scott, S Z Martin & E Huesing (eds), MEDINFO 2021: One world, one health \u2013 global partnership for digital innovation. Studies in Health Technology and Informatics, vol. 290, IOS Press, pp. 1094-1095. https://doi.org/10.3233/SHTI220284","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.3233/shti220284","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220284","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220284","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281905743.pdf","grobid_xml":"https://content.openalex.org/works/W4281905743.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2946690328","https://openalex.org/W2979411718"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Text":[0],"mining":[1],"of":[2,9,24,30,39,85],"the":[3,28,37,40,50,59,67,81],"biomedical":[4],"literature":[5],"enables":[6,36],"vast":[7],"quantities":[8],"information":[10],"to":[11,65,79],"be":[12],"extracted":[13],"and":[14,21,32,62,75,83,87],"summarised.":[15],"Here":[16],"we":[17],"describe":[18],"an":[19],"updated":[20],"improved":[22],"version":[23],"previous":[25],"methodology":[26],"for":[27],"analysis":[29,84],"gene":[31],"protein":[33],"biomarkers":[34],"that":[35,57],"use":[38,71],"newer":[41],"Pubtator":[42],"Central":[43],"annotations,":[44],"based":[45],"in":[46,72],"full":[47],"text,":[48],"improving":[49],"performance":[51],"using":[52],"a":[53],"local":[54],"SQLite":[55],"database,":[56],"reduces":[58],"running":[60],"time":[61],"resources":[63],"required":[64],"perform":[66],"analyses":[68],"facilitating":[69],"its":[70,77],"any":[73],"computer,":[74],"expands":[76],"capabilities":[78],"enable":[80],"retrieval":[82],"chemical":[86],"metabolic":[88],"biomarkers.":[89]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
