{"id":"https://openalex.org/W4281626629","doi":"https://doi.org/10.3233/shti220048","title":"Knowledge-Driven Drug-Use NamedEntity Recognition with Distant Supervision","display_name":"Knowledge-Driven Drug-Use NamedEntity Recognition with Distant Supervision","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4281626629","doi":"https://doi.org/10.3233/shti220048","pmid":"https://pubmed.ncbi.nlm.nih.gov/35672987"},"language":"en","primary_location":{"id":"doi:10.3233/shti220048","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220048","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220048","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220048","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015619335","display_name":"Goonmeet Bajaj","orcid":"https://orcid.org/0000-0003-0182-9200"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Goonmeet Bajaj","raw_affiliation_strings":["Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112484092","display_name":"Ugur Kursuncu","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ugur Kursuncu","raw_affiliation_strings":["Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023667301","display_name":"Manas Gaur","orcid":"https://orcid.org/0000-0002-5411-2230"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manas Gaur","raw_affiliation_strings":["Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065369018","display_name":"Usha Lokala","orcid":"https://orcid.org/0000-0001-6186-2171"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Usha Lokala","raw_affiliation_strings":["Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009827596","display_name":"Ayaz Hyder","orcid":"https://orcid.org/0000-0003-4865-6482"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ayaz Hyder","raw_affiliation_strings":["AI Institute, University of South Carolina, Columbia, City Two, South Carolina, USA"],"affiliations":[{"raw_affiliation_string":"AI Institute, University of South Carolina, Columbia, City Two, South Carolina, USA","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100755351","display_name":"Srinivasan Parthasarathy","orcid":"https://orcid.org/0000-0002-6062-6449"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivasan Parthasarathy","raw_affiliation_strings":["Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028772801","display_name":"Amit Sheth","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Sheth","raw_affiliation_strings":["Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA","Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Ohio State University, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5015619335"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":0.3426,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55339384,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"290","issue":null,"first_page":"140","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9677000045776367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7315409183502197},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6773155927658081},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6732250452041626},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6659939289093018},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.5858827233314514},{"id":"https://openalex.org/keywords/public-domain","display_name":"Public domain","score":0.5484115481376648},{"id":"https://openalex.org/keywords/government","display_name":"Government (linguistics)","score":0.48553916811943054},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.422211229801178},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3488032817840576},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08554467558860779}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7315409183502197},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6773155927658081},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6732250452041626},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6659939289093018},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.5858827233314514},{"id":"https://openalex.org/C512654426","wikidata":"https://www.wikidata.org/wiki/Q19652","display_name":"Public domain","level":2,"score":0.5484115481376648},{"id":"https://openalex.org/C2778137410","wikidata":"https://www.wikidata.org/wiki/Q2732820","display_name":"Government (linguistics)","level":2,"score":0.48553916811943054},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.422211229801178},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3488032817840576},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08554467558860779},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009275","descriptor_name":"Names","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009275","descriptor_name":"Names","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009275","descriptor_name":"Names","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti220048","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220048","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220048","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35672987","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35672987","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:scholarcommons.sc.edu:aii_fac_pub-1563","is_oa":true,"landing_page_url":"https://scholarcommons.sc.edu/aii_fac_pub/545","pdf_url":null,"source":{"id":"https://openalex.org/S4306401386","display_name":"Scholar Commons (University of South Carolina)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I155781252","host_organization_name":"University of South Carolina","host_organization_lineage":["https://openalex.org/I155781252"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.3233/shti220048","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220048","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220048","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281626629.pdf","grobid_xml":"https://content.openalex.org/works/W4281626629.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1940872118","https://openalex.org/W2061326496","https://openalex.org/W2113125055","https://openalex.org/W2123512824","https://openalex.org/W2130342755","https://openalex.org/W2147880316","https://openalex.org/W2404369708","https://openalex.org/W2540149843","https://openalex.org/W2609602893","https://openalex.org/W2891383691","https://openalex.org/W2896457183","https://openalex.org/W2925863688","https://openalex.org/W2951450498","https://openalex.org/W2965373594","https://openalex.org/W3023672669","https://openalex.org/W3103981637","https://openalex.org/W3107475963","https://openalex.org/W3114055400","https://openalex.org/W3137298232","https://openalex.org/W4301488752","https://openalex.org/W6600654476","https://openalex.org/W6601548533","https://openalex.org/W6601712973","https://openalex.org/W6610945104","https://openalex.org/W6638882871","https://openalex.org/W6675145916","https://openalex.org/W6702248584"],"related_works":["https://openalex.org/W2362192218","https://openalex.org/W2090214205","https://openalex.org/W2805290178","https://openalex.org/W2759030965","https://openalex.org/W2132309144","https://openalex.org/W1553453067","https://openalex.org/W113014154","https://openalex.org/W1489421327","https://openalex.org/W2154212984","https://openalex.org/W4281626629"],"abstract_inverted_index":{"As":[0],"Named":[1],"Entity":[2],"Recognition":[3],"(NER)":[4],"has":[5],"been":[6],"essential":[7],"in":[8,20,79,127,136],"identifying":[9],"critical":[10],"elements":[11],"of":[12,73,134],"unstructured":[13],"content,":[14],"generic":[15],"NER":[16,60],"tools":[17],"remain":[18],"limited":[19],"recognizing":[21],"entities":[22,41,119],"specific":[23,64,115],"to":[24,95,112],"a":[25,43,63,92],"domain,":[26],"such":[27,35],"as":[28,49],"drug":[29,108,122],"use":[30,123],"and":[31,82,102,124],"public":[32],"health.":[33],"For":[34],"high-impact":[36],"areas,":[37],"accurately":[38],"capturing":[39],"relevant":[40],"at":[42],"more":[44],"granular":[45],"level":[46],"is":[47,77],"critical,":[48],"this":[50,85],"information":[51],"influences":[52],"real-world":[53],"processes.":[54],"On":[55],"the":[56,97,121],"other":[57],"hand,":[58],"training":[59],"models":[61,104],"for":[62,99],"domain":[65,114],"without":[66],"handcrafted":[67],"features":[68],"requires":[69],"an":[70,132],"extensive":[71],"amount":[72],"labeled":[74],"data,":[75],"which":[76],"expensive":[78],"human":[80,100],"effort":[81],"time.":[83],"In":[84],"study,":[86],"we":[87],"employ":[88],"distant":[89],"supervision":[90],"utilizing":[91],"domain-specific":[93,106],"ontology":[94],"reduce":[96],"need":[98],"labor":[101],"train":[103],"incorporating":[105],"(e.g.,":[107],"use)":[109],"external":[110],"knowledge":[111],"recognize":[113],"entities.":[116],"We":[117],"capture":[118],"related":[120],"their":[125],"trends":[126],"government":[128],"epidemiology":[129],"reports,":[130],"with":[131],"improvement":[133],"8%":[135],"F1-score.":[137]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
