{"id":"https://openalex.org/W4281749931","doi":"https://doi.org/10.3233/shti220022","title":"Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval","display_name":"Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4281749931","doi":"https://doi.org/10.3233/shti220022","pmid":"https://pubmed.ncbi.nlm.nih.gov/35672961"},"language":"en","primary_location":{"id":"doi:10.3233/shti220022","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220022","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220022","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220022","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Matthew Spotnitz","orcid":null},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Spotnitz","raw_affiliation_strings":["Columbia University Medical Center Department of Biomedical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University Medical Center Department of Biomedical Informatics","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077766702","display_name":"Jason Patterson","orcid":null},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Patterson","raw_affiliation_strings":["Columbia University Medical Center Department of Biomedical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University Medical Center Department of Biomedical Informatics","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046553003","display_name":"Vojtech Huser","orcid":"https://orcid.org/0000-0002-0709-6573"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vojtech Huser","raw_affiliation_strings":["National Library of Medicine, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine, Bethesda, MD, USA","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009604048","display_name":"Chunhua Weng","orcid":"https://orcid.org/0000-0002-9624-0214"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunhua Weng","raw_affiliation_strings":["Columbia University Medical Center Department of Biomedical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University Medical Center Department of Biomedical Informatics","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080516734","display_name":"Karthik Natarajan","orcid":"https://orcid.org/0000-0002-9066-9431"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karthik Natarajan","raw_affiliation_strings":["Columbia University Medical Center Department of Biomedical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University Medical Center Department of Biomedical Informatics","institution_ids":["https://openalex.org/I2799503643"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9965,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72614968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"290","issue":null,"first_page":"12","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9573000073432922,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9573000073432922,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.8766687512397766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6522262692451477},{"id":"https://openalex.org/keywords/observational-study","display_name":"Observational study","score":0.607025682926178},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4004232883453369},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21400615572929382},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09289747476577759}],"concepts":[{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.8766687512397766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6522262692451477},{"id":"https://openalex.org/C23131810","wikidata":"https://www.wikidata.org/wiki/Q818574","display_name":"Observational study","level":2,"score":0.607025682926178},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4004232883453369},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21400615572929382},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09289747476577759},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti220022","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220022","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220022","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:35672961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35672961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti220022","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti220022","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI220022","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4067844156","display_name":null,"funder_award_id":"T15 LM007079","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G682085659","display_name":null,"funder_award_id":"R01LM009886","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6896722874","display_name":null,"funder_award_id":"5 T15 LM007079-27","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281749931.pdf","grobid_xml":"https://content.openalex.org/works/W4281749931.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W127864091","https://openalex.org/W2112307553","https://openalex.org/W2129126838","https://openalex.org/W2147559839","https://openalex.org/W2181753993","https://openalex.org/W2331125103","https://openalex.org/W2509053282","https://openalex.org/W2552477414"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2006073222","https://openalex.org/W2488916264","https://openalex.org/W2323573032","https://openalex.org/W4381328000","https://openalex.org/W2109147503","https://openalex.org/W1908077024","https://openalex.org/W198625436","https://openalex.org/W2095388346","https://openalex.org/W1984720268"],"abstract_inverted_index":{"Measurement":[0],"concepts":[1],"are":[2],"essential":[3],"to":[4],"observational":[5],"healthcare":[6],"research;":[7],"however,":[8],"a":[9,33,83],"lack":[10],"of":[11,17,35,73],"concept":[12,44,49,77,93],"harmonization":[13],"limits":[14],"the":[15,58,70],"quality":[16],"research":[18,25],"that":[19,31],"can":[20],"be":[21],"done":[22],"on":[23],"multisite":[24],"networks.":[26],"We":[27,46,90],"developed":[28],"five":[29],"methods":[30,105],"used":[32],"combination":[34],"automated,":[36],"semi-automated":[37,84],"and":[38,98,103],"manual":[39,104],"approaches":[40],"for":[41,95],"generating":[42],"measurement":[43],"sets.":[45],"validated":[47],"our":[48],"sets":[50,94],"by":[51,82,101],"calculating":[52],"their":[53],"frequencies":[54,72],"in":[55],"cohorts":[56],"from":[57],"Columbia":[59],"University":[60],"Irving":[61],"Medical":[62],"Center":[63],"(CUIMC)":[64],"database.":[65],"For":[66],"heart":[67],"transplant":[68],"patients,":[69],"preoperative":[71],"basic":[74],"metabolic":[75],"panel":[76],"sets,":[78],"which":[79],"we":[80],"generated":[81],"approach,":[85],"were":[86],"greater":[87],"than":[88],"99%.":[89],"also":[91],"made":[92],"lumbar":[96],"puncture":[97],"coagulation":[99],"panels,":[100],"automated":[102],"respectively.":[106]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
